Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_E09
(267 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457362-1|CAG33643.1| 125|Homo sapiens hage colony-stimulating... 68 5e-12
BC005024-1|AAH05024.1| 125|Homo sapiens mitochondria-associated... 68 5e-12
AK026514-1|BAB15494.1| 125|Homo sapiens protein ( Homo sapiens ... 68 5e-12
AF349455-1|AAL57767.1| 125|Homo sapiens mitochondria associated... 68 5e-12
AF151894-1|AAD34131.1| 125|Homo sapiens CGI-136 protein protein. 68 5e-12
BC109310-1|AAI09311.1| 873|Homo sapiens N-deacetylase/N-sulfotr... 27 8.1
BC109309-1|AAI09310.1| 873|Homo sapiens N-deacetylase/N-sulfotr... 27 8.1
AF076605-1|AAD46061.1| 876|Homo sapiens heparan N-deacetylase/N... 27 8.1
AF074924-1|AAD15978.1| 873|Homo sapiens heparan sulfate N-deace... 27 8.1
>CR457362-1|CAG33643.1| 125|Homo sapiens hage colony-stimulating
factor signal protein.
Length = 125
Score = 68.1 bits (159), Expect = 5e-12
Identities = 36/81 (44%), Positives = 48/81 (59%)
Frame = +1
Query: 25 VGRAFARALKQEIAASQEXXXXXXXXXXXXXXXXXXXSTGLTLEEAMQILNLDKVDNEKI 204
VGRAFARAL+QE AAS+ +GL+L+EA QILN+ K+ E++
Sbjct: 16 VGRAFARALRQEFAASRAAADARGRAGHRSAAASNL--SGLSLQEAQQILNVSKLSPEEV 73
Query: 205 HKSYFSRFTVKDEAKGGSFYL 267
K+Y F V D++ GGSFYL
Sbjct: 74 QKNYEHLFKVNDKSVGGSFYL 94
>BC005024-1|AAH05024.1| 125|Homo sapiens mitochondria-associated
protein involved in granulocyte-macrophage colony-stimu
protein.
Length = 125
Score = 68.1 bits (159), Expect = 5e-12
Identities = 36/81 (44%), Positives = 48/81 (59%)
Frame = +1
Query: 25 VGRAFARALKQEIAASQEXXXXXXXXXXXXXXXXXXXSTGLTLEEAMQILNLDKVDNEKI 204
VGRAFARAL+QE AAS+ +GL+L+EA QILN+ K+ E++
Sbjct: 16 VGRAFARALRQEFAASRAAADARGRAGHRSAAASNL--SGLSLQEAQQILNVSKLSPEEV 73
Query: 205 HKSYFSRFTVKDEAKGGSFYL 267
K+Y F V D++ GGSFYL
Sbjct: 74 QKNYEHLFKVNDKSVGGSFYL 94
>AK026514-1|BAB15494.1| 125|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22861 fis, clone KAT01850. ).
Length = 125
Score = 68.1 bits (159), Expect = 5e-12
Identities = 36/81 (44%), Positives = 48/81 (59%)
Frame = +1
Query: 25 VGRAFARALKQEIAASQEXXXXXXXXXXXXXXXXXXXSTGLTLEEAMQILNLDKVDNEKI 204
VGRAFARAL+QE AAS+ +GL+L+EA QILN+ K+ E++
Sbjct: 16 VGRAFARALRQEFAASRAAADARGRAGHRSAAASNL--SGLSLQEAQQILNVSKLSPEEV 73
Query: 205 HKSYFSRFTVKDEAKGGSFYL 267
K+Y F V D++ GGSFYL
Sbjct: 74 QKNYEHLFKVNDKSVGGSFYL 94
>AF349455-1|AAL57767.1| 125|Homo sapiens mitochondria associated
granulocyte macrophage CSF signaling molecule Magmas
protein.
Length = 125
Score = 68.1 bits (159), Expect = 5e-12
Identities = 36/81 (44%), Positives = 48/81 (59%)
Frame = +1
Query: 25 VGRAFARALKQEIAASQEXXXXXXXXXXXXXXXXXXXSTGLTLEEAMQILNLDKVDNEKI 204
VGRAFARAL+QE AAS+ +GL+L+EA QILN+ K+ E++
Sbjct: 16 VGRAFARALRQEFAASRAAADARGRAGHRSAAASNL--SGLSLQEAQQILNVSKLSPEEV 73
Query: 205 HKSYFSRFTVKDEAKGGSFYL 267
K+Y F V D++ GGSFYL
Sbjct: 74 QKNYEHLFKVNDKSVGGSFYL 94
>AF151894-1|AAD34131.1| 125|Homo sapiens CGI-136 protein protein.
Length = 125
Score = 68.1 bits (159), Expect = 5e-12
Identities = 36/81 (44%), Positives = 48/81 (59%)
Frame = +1
Query: 25 VGRAFARALKQEIAASQEXXXXXXXXXXXXXXXXXXXSTGLTLEEAMQILNLDKVDNEKI 204
VGRAFARAL+QE AAS+ +GL+L+EA QILN+ K+ E++
Sbjct: 16 VGRAFARALRQEFAASRAAADARGRAGHRSAAASNL--SGLSLQEAQQILNVSKLSPEEV 73
Query: 205 HKSYFSRFTVKDEAKGGSFYL 267
K+Y F V D++ GGSFYL
Sbjct: 74 QKNYEHLFKVNDKSVGGSFYL 94
>BC109310-1|AAI09311.1| 873|Homo sapiens
N-deacetylase/N-sulfotransferase (heparan glucosaminyl)
3 protein.
Length = 873
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 3 AGEFRHEGRTSFRKGSKTRNCCITGSSQESWWWP 104
+G+F H G +G C+ GS E WW+P
Sbjct: 350 SGKFYHTGTEEEDEGDD----CLLGSVDEFWWFP 379
>BC109309-1|AAI09310.1| 873|Homo sapiens
N-deacetylase/N-sulfotransferase (heparan glucosaminyl)
3 protein.
Length = 873
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 3 AGEFRHEGRTSFRKGSKTRNCCITGSSQESWWWP 104
+G+F H G +G C+ GS E WW+P
Sbjct: 350 SGKFYHTGTEEEDEGDD----CLLGSVDEFWWFP 379
>AF076605-1|AAD46061.1| 876|Homo sapiens heparan
N-deacetylase/N-sulfotransferase 3 protein.
Length = 876
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 3 AGEFRHEGRTSFRKGSKTRNCCITGSSQESWWWP 104
+G+F H G +G C+ GS E WW+P
Sbjct: 353 SGKFYHTGTEEEDEGDD----CLLGSVDEFWWFP 382
>AF074924-1|AAD15978.1| 873|Homo sapiens heparan sulfate
N-deacetylase/N-sulfotransferase 3 protein.
Length = 873
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 3 AGEFRHEGRTSFRKGSKTRNCCITGSSQESWWWP 104
+G+F H G +G C+ GS E WW+P
Sbjct: 350 SGKFYHTGTEEEDEGDD----CLLGSVDEFWWFP 379
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.316 0.133 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,177,895
Number of Sequences: 237096
Number of extensions: 494956
Number of successful extensions: 1125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 76,859,062
effective HSP length: 66
effective length of database: 61,210,726
effective search space used: 1346635972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -