Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_E09
(267 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93382-6|CAB07617.1| 136|Caenorhabditis elegans Hypothetical pr... 49 4e-07
Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical pr... 28 0.79
Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical pr... 28 0.79
Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical pr... 28 0.79
Z70268-1|CAA94217.1| 390|Caenorhabditis elegans Hypothetical pr... 26 3.2
AF003151-11|AAO61426.1| 402|Caenorhabditis elegans Hypothetical... 26 3.2
AF003151-10|AAK18913.2| 477|Caenorhabditis elegans Hypothetical... 26 3.2
S68230-1|AAD14008.1| 514|Caenorhabditis elegans histidyl tRNA s... 25 5.6
L13152-1|AAB38116.1| 525|Caenorhabditis elegans histidyl tRNA s... 25 5.6
U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical p... 25 7.4
AF025456-1|AAB70959.3| 438|Caenorhabditis elegans Hypothetical ... 25 7.4
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein. 25 9.7
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo... 25 9.7
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo... 25 9.7
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo... 25 9.7
>Z93382-6|CAB07617.1| 136|Caenorhabditis elegans Hypothetical
protein F45G2.8 protein.
Length = 136
Score = 49.2 bits (112), Expect = 4e-07
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Frame = +1
Query: 16 GTRVGRAFARALKQEI-----AASQEXXXXXXXXXXXXXXXXXXXSTGLTLEEAMQILNL 180
G V +A RA++ EI AA++ G++LEE++QILN+
Sbjct: 14 GEAVAKALTRAVRDEIKQTQQAAARHAASTGQSASETRENANSNAKLGISLEESLQILNV 73
Query: 181 -DKVDNEKIHKSYFSRFTVKDEAKGGSFYL 267
++ E++ K Y F + D++KGG+ YL
Sbjct: 74 KTPLNREEVEKHYEHLFNINDKSKGGTLYL 103
>Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical
protein T21E8.1b protein.
Length = 1204
Score = 28.3 bits (60), Expect = 0.79
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 145 LTLEEAMQILNLDKVDNEKIHKSYFSRFTVKDEAKG 252
L LE+ +I++L +KIHKSYF R ++ A G
Sbjct: 833 LNLED--KIMSLISEHLQKIHKSYFKRAIIQGAANG 866
>Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical
protein T21E8.1a protein.
Length = 1263
Score = 28.3 bits (60), Expect = 0.79
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 145 LTLEEAMQILNLDKVDNEKIHKSYFSRFTVKDEAKG 252
L LE+ +I++L +KIHKSYF R ++ A G
Sbjct: 892 LNLED--KIMSLISEHLQKIHKSYFKRAIIQGAANG 925
>Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical
protein T21E8.2 protein.
Length = 1263
Score = 28.3 bits (60), Expect = 0.79
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 145 LTLEEAMQILNLDKVDNEKIHKSYFSRFTVKDEAKG 252
L LE+ +I++L +KIHKSYF R ++ A G
Sbjct: 892 LNLED--KIMSLISEHLQKIHKSYFKRAIIQGAANG 925
>Z70268-1|CAA94217.1| 390|Caenorhabditis elegans Hypothetical
protein T21E8.4 protein.
Length = 390
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 53 NKKLLHHRKQPRELVVALKEPEEQPLMLPQ 142
N K R + +EL+ A+KE EE L+L Q
Sbjct: 336 NSKANEDRVKRKELIDAIKEAEETDLLLNQ 365
>AF003151-11|AAO61426.1| 402|Caenorhabditis elegans Hypothetical
protein D1007.5b protein.
Length = 402
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 202 FFRCLLYLDSIFA*LLPELSLWKH*RLLFWLLQGHHQLS 86
FF C L+L S+ A L L+++K L+WL + + S
Sbjct: 46 FFECTLFLYSVLALFLQYLNIYK---TLWWLPKSYWHYS 81
>AF003151-10|AAK18913.2| 477|Caenorhabditis elegans Hypothetical
protein D1007.5a protein.
Length = 477
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 202 FFRCLLYLDSIFA*LLPELSLWKH*RLLFWLLQGHHQLS 86
FF C L+L S+ A L L+++K L+WL + + S
Sbjct: 46 FFECTLFLYSVLALFLQYLNIYK---TLWWLPKSYWHYS 81
>S68230-1|AAD14008.1| 514|Caenorhabditis elegans histidyl tRNA
synthetase protein.
Length = 514
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -3
Query: 226 IEKNNFCEFFRCLLYLDSIFA*LLPELSLWK 134
+ + + EF++C + + +LPELS+W+
Sbjct: 119 MSRGRYREFYQCDFDIAGQYDLMLPELSVWE 149
>L13152-1|AAB38116.1| 525|Caenorhabditis elegans histidyl tRNA
synthetase protein.
Length = 525
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -3
Query: 226 IEKNNFCEFFRCLLYLDSIFA*LLPELSLWK 134
+ + + EF++C + + +LPELS+W+
Sbjct: 130 MSRGRYREFYQCDFDIAGQYDLMLPELSVWE 160
>U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical
protein F26G1.1 protein.
Length = 1021
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 41 QGL*NKKLLHHRKQPRELVVALKEPEEQPL 130
+GL +K L H +Q +++ AL E E+PL
Sbjct: 508 EGLPSKYLSVHSEQVLDIIFALHEDFEEPL 537
>AF025456-1|AAB70959.3| 438|Caenorhabditis elegans Hypothetical
protein C46F9.4 protein.
Length = 438
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 145 LTLEEAMQILNLDKVDNEKIHKSYFSRFTV 234
LTLE ++ILN+ +D+E I + S FT+
Sbjct: 391 LTLEAHVEILNMTGIDDENIFQKP-SGFTI 419
>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
Length = 1379
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 169 ILNLDKVDNEKIHKSYFSRFTVKDEAKGGS 258
IL++D V E +Y + DEA GGS
Sbjct: 126 ILDMDDVLEEVFDLNYDQILAITDEANGGS 155
>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform c protein.
Length = 1340
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 169 ILNLDKVDNEKIHKSYFSRFTVKDEAKGGS 258
IL++D V E +Y + DEA GGS
Sbjct: 90 ILDMDDVLEEVFDLNYDQILAITDEANGGS 119
>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform a protein.
Length = 1376
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 169 ILNLDKVDNEKIHKSYFSRFTVKDEAKGGS 258
IL++D V E +Y + DEA GGS
Sbjct: 126 ILDMDDVLEEVFDLNYDQILAITDEANGGS 155
>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform b protein.
Length = 1379
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 169 ILNLDKVDNEKIHKSYFSRFTVKDEAKGGS 258
IL++D V E +Y + DEA GGS
Sbjct: 126 ILDMDDVLEEVFDLNYDQILAITDEANGGS 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.133 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,217,270
Number of Sequences: 27780
Number of extensions: 76061
Number of successful extensions: 175
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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