Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_E08
(388 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0174 + 13815478-13815903 138 1e-33
03_01_0066 - 537729-538163 136 4e-33
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 30 0.74
02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114... 29 0.97
05_04_0273 + 19632430-19632762,19633109-19633177,19633318-196333... 29 1.7
01_01_0189 - 1640581-1640832,1640936-1641132,1641243-1641608,164... 27 3.9
12_02_0534 - 20103908-20105897,20106314-20107116 27 5.2
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 27 5.2
08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713... 27 6.9
08_01_0057 - 383603-384256 27 6.9
07_01_0358 - 2631214-2632992 27 6.9
05_07_0360 + 29542854-29542900,29542988-29543129,29543207-295445... 27 6.9
08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157... 26 9.1
06_03_1207 + 28418473-28421073 26 9.1
06_01_0829 - 6254769-6254852,6254940-6255024,6255158-6255245,625... 26 9.1
06_01_0117 + 912780-912959,913754-913828,914059-914112,914848-91... 26 9.1
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 26 9.1
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 26 9.1
02_04_0512 + 23565210-23566058,23566824-23568224 26 9.1
>10_07_0174 + 13815478-13815903
Length = 141
Score = 138 bits (335), Expect = 1e-33
Identities = 66/121 (54%), Positives = 87/121 (71%)
Frame = +2
Query: 26 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 205
MGRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGFTTHLMRR
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60
Query: 206 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 385
+ VRGIS+KLQEEERERR ++VPE SALE + I VD +T +ML L +++ G++
Sbjct: 61 IQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQ 120
Query: 386 Q 388
Q
Sbjct: 121 Q 121
>03_01_0066 - 537729-538163
Length = 144
Score = 136 bits (330), Expect = 4e-33
Identities = 65/117 (55%), Positives = 85/117 (72%)
Frame = +2
Query: 26 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 205
MGRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRR 60
Query: 206 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGL 376
+ VRGIS+KLQEEERERR ++VP+ SALE D I VD +T DML L +++ G+
Sbjct: 61 IQRGPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV 117
>04_04_0923 +
29441740-29441980,29442321-29442401,29442630-29442719,
29443123-29443203,29443721-29443774,29444062-29444111,
29444542-29444623,29444734-29444838,29445514-29445641,
29445726-29445797,29445887-29445937,29446029-29446100,
29446201-29446278,29446446-29447270,29447648-29448556
Length = 972
Score = 29.9 bits (64), Expect = 0.74
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +2
Query: 188 THLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 367
T LM ++I SQ SI ++E N+V A + +I S T+D+ +D++N
Sbjct: 311 TSLMEQIISSQP---SISEVQQEISTESNFVATPRAFQNSMILTTSRTEDIPFDMDYANT 367
Query: 368 NGLQ 379
N ++
Sbjct: 368 NQVE 371
>02_04_0449 +
23010099-23010317,23010873-23010934,23011399-23011450,
23011803-23011917,23012024-23012118,23012852-23012958,
23013042-23013156,23014159-23014203,23014324-23014392
Length = 292
Score = 29.5 bits (63), Expect = 0.97
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 360 LKSSIFNISLVSESTSMISCSRADT 286
+K+ +F+I LVSE S+I+C A T
Sbjct: 158 VKNKVFSIDLVSEDPSVIACDMAHT 182
>05_04_0273 +
19632430-19632762,19633109-19633177,19633318-19633374,
19633534-19633597,19633887-19634102,19634761-19634803,
19635267-19635345,19635467-19635559
Length = 317
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = -1
Query: 244 KLNRDSSHLGVYET----SHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIEVKSKPSVVFF 77
+LNRD + L V++ S Q +P+N K SNF + +G+ +P V
Sbjct: 127 RLNRDVAKLEVFKKTLMQSLQEDEDPANTTPKARVSETSNFSSATSVGVPRPPRPHVFLP 186
Query: 76 DYN 68
YN
Sbjct: 187 SYN 189
>01_01_0189 -
1640581-1640832,1640936-1641132,1641243-1641608,
1641826-1642224,1642313-1642719,1642814-1642941
Length = 582
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1
Query: 1 ARGLHRRNHGSC 36
A GLHRR HGSC
Sbjct: 37 AAGLHRRGHGSC 48
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 218 QVRGISIKLQEEER---ERRDNYVPEVSALEQDIIEVDSDTKDMLK 346
Q+ G+ + ++ + ERRD Y+ + +A +++VDS + M +
Sbjct: 111 QIHGVMKDIMDQVKKVSERRDRYIVDDNAARPTVVDVDSRLEAMYR 156
>04_03_0037 -
9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 27.1 bits (57), Expect = 5.2
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Frame = +2
Query: 146 IPTKPLRNKIAG---FTTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIE 316
+ TK L+ + ++ + + +H ++ G KL +E++ + +V LEQD++
Sbjct: 752 LSTKELQKMVQALPQYSDQIDKLALHVEIAG---KLNSTIKEQQ---LKDVGQLEQDLVF 805
Query: 317 VDSDTKDMLKM----LDFSNINGLQL 382
D+ TK+++ LD S N L+L
Sbjct: 806 GDAGTKELINFFRTHLDISRENKLRL 831
>08_02_0545 +
18470313-18470669,18470901-18471095,18471183-18471362,
18471462-18471656,18472081-18472179,18472271-18472780,
18472896-18473225
Length = 621
Score = 26.6 bits (56), Expect = 6.9
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Frame = +2
Query: 98 TLDFDTNKRICEEIAIIP---TKPLRN--KIAGFTTHLMRR-LIHSQVRGISIKLQEEER 259
++ D KR+ +EI + +K + N K A ++ R IH QV+ I + + E +R
Sbjct: 196 SISLDEEKRLVKEIKQLNGTRSKVIENAAKRAKMQDTVVERGTIHDQVKQIGVGIDEVKR 255
Query: 260 ERRDNYVPEVSALEQDIIEVDSD 328
+R+ ++ LE I VD +
Sbjct: 256 DRQ-AVRDKIKVLEDQIHAVDGE 277
>08_01_0057 - 383603-384256
Length = 217
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 274 LCPRSICSRTGYH*SRFGHQGYVEDA 351
L P ++CSR+G S+ GH G+ + A
Sbjct: 9 LMPATLCSRSGPPSSKHGHGGHAKRA 34
>07_01_0358 - 2631214-2632992
Length = 592
Score = 26.6 bits (56), Expect = 6.9
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 161 LRNKIAGFTTHLMRRLIHSQVRGISIKLQE-EERERRDNYVPEVSALEQDIIEVDSDT 331
LRN + F +M H + I L E ER RR+ Y+P S + DI E + +T
Sbjct: 465 LRNSVYEF---VMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKET 519
>05_07_0360 +
29542854-29542900,29542988-29543129,29543207-29544529,
29544642-29544715,29545850-29545964,29546682-29546714
Length = 577
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 185 TTHLMRRLIHSQVRGISIKLQEEERERRDN 274
+T MRRLIH Q+R S ++++E D+
Sbjct: 207 STSNMRRLIHQQIRRSSSSESDKKKEDADD 236
>08_01_0189 +
1578935-1578950,1579227-1579390,1579493-1579605,
1579850-1580399,1580514-1580813,1581093-1581133,
1581359-1581606,1581983-1582086,1582177-1582323
Length = 560
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 239 KLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 367
KL+E++ E D V E+D +++D D +DF+ +
Sbjct: 178 KLEEKDGEEGDENVASEEEDEEDGLKIDEAKVDESAQMDFAKV 220
>06_03_1207 + 28418473-28421073
Length = 866
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -2
Query: 237 IEIPRTWECMRRLIKWVVNPAILLRRGLV 151
IE+ TW+ + R++K +NP + L+
Sbjct: 679 IELDITWQLLERMVKHGLNPTVTTYSSLI 707
>06_01_0829 -
6254769-6254852,6254940-6255024,6255158-6255245,
6255344-6255407,6255496-6255576,6256709-6256781,
6256871-6257385,6258168-6258284
Length = 368
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 242 LQEEERERRDNYVPEVSALEQDIIEVDSD 328
+ E E +R +++PE + ++++I E D D
Sbjct: 26 VSERESQRHPSHLPEATEVQENIYEDDDD 54
>06_01_0117 +
912780-912959,913754-913828,914059-914112,914848-914913,
915137-915241,915454-915570,915827-915927,916012-916058,
916664-916735,916828-916983,917139-917368,917472-917511,
917603-917736,917830-917931,918726-918770,919129-919206,
919225-919365,919447-919542,919732-919833,920185-920283
Length = 679
Score = 26.2 bits (55), Expect = 9.1
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +2
Query: 218 QVRGISIKLQEEERERRDNY-VPEVSALEQDIIEVDSDTK--DMLKMLDFSNI 367
QV ++ + +EE E D+Y VPE + LE+ DSD K D + + FS I
Sbjct: 374 QVDNKNLDMIDEESEEDDDYQVPEAN-LEEAPTRSDSDAKYTDPIDLSCFSGI 425
>05_07_0173 +
28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 191 HLMRRLIHSQVRGISIKLQEEERERRDNYVPE 286
HL+ ++HS V +S++L E ++R+ N+ E
Sbjct: 564 HLVDVILHSSVGDLSMELVNEIKDRQRNFDTE 595
>04_03_0659 -
18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 26.2 bits (55), Expect = 9.1
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 188 THLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 367
T LM ++I SQ SI ++E N+V A + +I S T+D+ +D++++
Sbjct: 355 TSLMEQIISSQP---SISEVQQEISTESNFVATPRAFQNSMILTTSRTEDIPFDMDYADM 411
Query: 368 N 370
+
Sbjct: 412 D 412
>02_04_0512 + 23565210-23566058,23566824-23568224
Length = 749
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 182 FTTHLMRRLIHSQVRGISIKLQEEERERRDN 274
F +M R +H+ RG S+++ E ERR +
Sbjct: 198 FRLEMMSRAVHAAARGGSVEMLRELIERRSD 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,514,858
Number of Sequences: 37544
Number of extensions: 172231
Number of successful extensions: 448
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -