Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E08
         (388 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M22142-1|AAA28869.1|  131|Drosophila melanogaster protein ( D.me...   196   1e-50
BT001651-1|AAN71406.1|  131|Drosophila melanogaster RE44119p pro...   196   1e-50
AJ271817-3|CAB72251.1|  131|Drosophila melanogaster ribosomal pr...   196   1e-50
AE014296-1654|AAF50272.1|  131|Drosophila melanogaster CG3922-PB...   196   1e-50
AE014297-4552|AAN14221.1| 1109|Drosophila melanogaster CG31028-P...    29   2.8  
AY119169-1|AAM51029.1|  918|Drosophila melanogaster RH46576p pro...    28   4.9  
AE014298-1936|AAF48298.1|  918|Drosophila melanogaster CG12176-P...    28   4.9  
DQ923614-1|ABI95804.1| 2765|Drosophila melanogaster DUNC79 protein.    27   6.4  
AE014297-2646|AAF55654.2| 2958|Drosophila melanogaster CG5237-PA...    27   6.4  
U91980-1|AAC47506.1| 2346|Drosophila melanogaster Tpr homolog pr...    27   8.5  
AE013599-1350|AAF58615.1| 2346|Drosophila melanogaster CG8274-PA...    27   8.5  

>M22142-1|AAA28869.1|  131|Drosophila melanogaster protein (
           D.melanogaster ribosomalprotein S17 gene, complete cds.
           ).
          Length = 131

 Score =  196 bits (477), Expect = 1e-50
 Identities = 96/121 (79%), Positives = 101/121 (83%)
 Frame = +2

Query: 26  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 205
           MGRVRT             YYTRLTLDF TNKRICEE+AIIPTKPLRNKIAG+ THLM R
Sbjct: 1   MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGR 60

Query: 206 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 385
           L HSQVRGISIKLQEEERERRDNYVP VSALEQDIIEVD+DTK+MLK+LDF NI GLQLT
Sbjct: 61  LRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLT 120

Query: 386 Q 388
           Q
Sbjct: 121 Q 121


>BT001651-1|AAN71406.1|  131|Drosophila melanogaster RE44119p
           protein.
          Length = 131

 Score =  196 bits (477), Expect = 1e-50
 Identities = 96/121 (79%), Positives = 101/121 (83%)
 Frame = +2

Query: 26  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 205
           MGRVRT             YYTRLTLDF TNKRICEE+AIIPTKPLRNKIAG+ THLM R
Sbjct: 1   MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGR 60

Query: 206 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 385
           L HSQVRGISIKLQEEERERRDNYVP VSALEQDIIEVD+DTK+MLK+LDF NI GLQLT
Sbjct: 61  LRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLT 120

Query: 386 Q 388
           Q
Sbjct: 121 Q 121


>AJ271817-3|CAB72251.1|  131|Drosophila melanogaster ribosomal
           protein S17 protein.
          Length = 131

 Score =  196 bits (477), Expect = 1e-50
 Identities = 96/121 (79%), Positives = 101/121 (83%)
 Frame = +2

Query: 26  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 205
           MGRVRT             YYTRLTLDF TNKRICEE+AIIPTKPLRNKIAG+ THLM R
Sbjct: 1   MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGR 60

Query: 206 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 385
           L HSQVRGISIKLQEEERERRDNYVP VSALEQDIIEVD+DTK+MLK+LDF NI GLQLT
Sbjct: 61  LRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLT 120

Query: 386 Q 388
           Q
Sbjct: 121 Q 121


>AE014296-1654|AAF50272.1|  131|Drosophila melanogaster CG3922-PB
           protein.
          Length = 131

 Score =  196 bits (477), Expect = 1e-50
 Identities = 96/121 (79%), Positives = 101/121 (83%)
 Frame = +2

Query: 26  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 205
           MGRVRT             YYTRLTLDF TNKRICEE+AIIPTKPLRNKIAG+ THLM R
Sbjct: 1   MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGR 60

Query: 206 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 385
           L HSQVRGISIKLQEEERERRDNYVP VSALEQDIIEVD+DTK+MLK+LDF NI GLQLT
Sbjct: 61  LRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLT 120

Query: 386 Q 388
           Q
Sbjct: 121 Q 121


>AE014297-4552|AAN14221.1| 1109|Drosophila melanogaster CG31028-PB,
           isoform B protein.
          Length = 1109

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 292 RYFWDIIVTPFTLLFLKLNRDSSHLGVYETSHQMGGE 182
           RY   ++ TP +L FL L+ D+ HL  Y +   + GE
Sbjct: 17  RYLTLLMNTPLSLSFLCLSADAQHLIAYISQRGLHGE 53


>AY119169-1|AAM51029.1|  918|Drosophila melanogaster RH46576p
           protein.
          Length = 918

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 16/96 (16%)
 Frame = +2

Query: 146 IPTKPLRNKIAGFTTHLMRRLIHSQVRGISI----------KLQEEERERRDNYVPEVSA 295
           +P  P    IAG  T L++RLI  Q R   I          + QE E + RD  +     
Sbjct: 707 LPNDPKCFCIAGDETFLVKRLILQQPRTCDIVRMEWLLRVCQKQELELKPRD-LIAATEP 765

Query: 296 LEQDIIEV-----DSDTKDMLKMLDFSN-INGLQLT 385
           L+QD+ E      DS TKD+  + +  + + G++LT
Sbjct: 766 LQQDLAECFDRHGDSYTKDIANVEELQDLLQGIELT 801


>AE014298-1936|AAF48298.1|  918|Drosophila melanogaster CG12176-PA
           protein.
          Length = 918

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 16/96 (16%)
 Frame = +2

Query: 146 IPTKPLRNKIAGFTTHLMRRLIHSQVRGISI----------KLQEEERERRDNYVPEVSA 295
           +P  P    IAG  T L++RLI  Q R   I          + QE E + RD  +     
Sbjct: 707 LPNDPKCFCIAGDETFLVKRLILQQPRTCDIVRMEWLLRVCQKQELELKPRD-LIAATEP 765

Query: 296 LEQDIIEV-----DSDTKDMLKMLDFSN-INGLQLT 385
           L+QD+ E      DS TKD+  + +  + + G++LT
Sbjct: 766 LQQDLAECFDRHGDSYTKDIANVEELQDLLQGIELT 801


>DQ923614-1|ABI95804.1| 2765|Drosophila melanogaster DUNC79 protein.
          Length = 2765

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 254  ERERRDNYVPEVSALEQDIIEVDSDTKD 337
            ER R    +P++S L+QD ++V   TKD
Sbjct: 1924 ERVRDGLNLPDISHLKQDSLDVSESTKD 1951


>AE014297-2646|AAF55654.2| 2958|Drosophila melanogaster CG5237-PA
            protein.
          Length = 2958

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 254  ERERRDNYVPEVSALEQDIIEVDSDTKD 337
            ER R    +P++S L+QD ++V   TKD
Sbjct: 2117 ERVRDGLNLPDISHLKQDSLDVSESTKD 2144


>U91980-1|AAC47506.1| 2346|Drosophila melanogaster Tpr homolog
           protein.
          Length = 2346

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/40 (25%), Positives = 26/40 (65%)
 Frame = +2

Query: 233 SIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKML 352
           +IKL++EE++  D +  E++++ +++ E  +   ++ K L
Sbjct: 874 AIKLKDEEKQLADKWQAELTSVREELAEKVNKVNELSKKL 913


>AE013599-1350|AAF58615.1| 2346|Drosophila melanogaster CG8274-PA
           protein.
          Length = 2346

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/40 (25%), Positives = 26/40 (65%)
 Frame = +2

Query: 233 SIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKML 352
           +IKL++EE++  D +  E++++ +++ E  +   ++ K L
Sbjct: 874 AIKLKDEEKQLADKWQAELTSVREELAEKVNKVNELSKKL 913


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,123,061
Number of Sequences: 53049
Number of extensions: 301334
Number of successful extensions: 916
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1066083345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)