Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E07
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    81   5e-17
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    81   5e-17
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   3.4  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   4.5  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    25   4.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   4.5  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    24   6.0  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    24   6.0  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    24   6.0  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    24   7.9  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    24   7.9  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 81.0 bits (191), Expect = 5e-17
 Identities = 42/86 (48%), Positives = 58/86 (67%)
 Frame = +3

Query: 96  KGITDKAIKIRPARLKGIQTKHSKFVRDLVRELVGHS*YEKRAMELLKVSKDKRALKFLK 275
           K +T + +  RP+R KG  +K + FVR +VRE+ G + YE+R MEL++ S+DKRA K  K
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 276 RRLGTHIRAKRKREELRNVLTQMRKA 353
           +RLGT  RAK K EEL +V+   R A
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSRLA 98


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 81.0 bits (191), Expect = 5e-17
 Identities = 42/86 (48%), Positives = 58/86 (67%)
 Frame = +3

Query: 96  KGITDKAIKIRPARLKGIQTKHSKFVRDLVRELVGHS*YEKRAMELLKVSKDKRALKFLK 275
           K +T + +  RP+R KG  +K + FVR +VRE+ G + YE+R MEL++ S+DKRA K  K
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 276 RRLGTHIRAKRKREELRNVLTQMRKA 353
           +RLGT  RAK K EEL +V+   R A
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSRLA 98


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 7/22 (31%), Positives = 18/22 (81%)
 Frame = -2

Query: 253 LSFDTLSNSIALFSY*ECPTSS 188
           +S+D+LS+ +++ S+ +CP ++
Sbjct: 79  MSYDSLSDDVSVLSFLDCPLTT 100


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +3

Query: 63  GHKTTKISAGKKGITDKAIKIRPARLKG---IQTKHSKFVRDLVRELV 197
           G+   K S      TDK   I+P  LKG   + T  +K    + R+L+
Sbjct: 730 GNPVDKNSTSPSKSTDKLDPIKPVFLKGLFSVSTTSTKSTESIQRDLI 777


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 44  RNWSAKRPQNDKDIRWQKGY 103
           +NW    PQ   +  W+KGY
Sbjct: 219 KNWEYPSPQQMYNAMWRKGY 238


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 192  LVGHS*YEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELRNVLTQMR 347
            L+ H+      ++ L+VSKD       KRR+ THI  +  +R  L  V  Q+R
Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 266 LKGALIFRYFEQFHCPLLILRVPNK 192
           LK   +  Y  +F+CP+ +LRV  K
Sbjct: 309 LKIEFLTHYGSEFYCPVSLLRVYGK 333


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 180 LVRELVGHS*YEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRKREELR 326
           ++RE +G   + K  +     ++ K ALKF+ R+L      H+R +R+   L+
Sbjct: 35  IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLK 87


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 348 SSSVLVRS*ALHASSSRGCVCRGDAS 271
           S  V++   + H S++RGC+   DAS
Sbjct: 406 SDKVIIGYDSFHTSNNRGCLALFDAS 431


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 88  LAKRVLQTKPLKLGQLG*RAFKPNTLSLSAIWFVN 192
           +A +  QTK  K    G R  KP++LS S +  VN
Sbjct: 113 IAPKKKQTKQKKPSVRGRRGRKPSSLSSSTLHSVN 147


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 165 KFVRDLVRELVGHS*YE-KRAMELLKVSKDKRAL-KFLKRRLGTHIRAKRKREELRNVLT 338
           K +R L +  V  S  E  RA++    ++  R   K+  + +   ++ K K EELRN+  
Sbjct: 61  KAIRYLNKSYVETSRIEVHRALDYRSANEKLRPYSKYASKNIELKLQKKEKEEELRNLEE 120

Query: 339 QMRK 350
           +  K
Sbjct: 121 EKAK 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,130
Number of Sequences: 5004
Number of extensions: 26679
Number of successful extensions: 82
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)