Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_E07
(353 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 99 1e-21
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 98 2e-21
07_03_0078 - 13147741-13148913 32 0.15
07_03_0079 + 13169773-13170861 27 4.2
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 27 4.2
02_01_0411 - 2998806-3000938 27 4.2
11_02_0038 - 7631462-7634428,7635975-7636250 27 5.6
05_01_0113 + 760584-760861,760964-761021,761229-761306 27 5.6
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842... 26 7.4
09_01_0024 + 438288-438542,439020-439069,440096-440351 26 9.8
08_01_1068 + 10899965-10900129,10900408-10900562,10900688-109009... 26 9.8
04_03_0934 - 20912932-20912997,20913131-20913172,20913477-209138... 26 9.8
03_06_0682 - 35516081-35518303 26 9.8
>01_06_1294 -
36076524-36076554,36076821-36076891,36077221-36077275,
36077363-36077562,36078614-36078715
Length = 152
Score = 98.7 bits (235), Expect = 1e-21
Identities = 53/106 (50%), Positives = 68/106 (64%)
Frame = +3
Query: 30 PRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVRELVGHS* 209
P+ + +G+ KGH TK + + RP+ KG TK FVR L+RE+VG +
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAP 55
Query: 210 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRNVLTQMR 347
YEKR ELLKV KDKRALK KR+LGTH RAK+KREE+ V+ +MR
Sbjct: 56 YEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR 101
>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
Length = 113
Score = 98.3 bits (234), Expect = 2e-21
Identities = 53/106 (50%), Positives = 68/106 (64%)
Frame = +3
Query: 30 PRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVRELVGHS* 209
P+ + +G+ KGH TK + + RP+ KG TK FVR+L+RE+ G +
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAP 55
Query: 210 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRNVLTQMR 347
YEKR ELLKV KDKRALK KR+LGTH RAK+KREE+ VL +MR
Sbjct: 56 YEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMR 101
>07_03_0078 - 13147741-13148913
Length = 390
Score = 31.9 bits (69), Expect = 0.15
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 133 AGLILMALSVIPFLPADIFVVLWPF 59
AGL+ AL VIP LP + +V WPF
Sbjct: 71 AGLLYFALVVIPALPGVLRLVAWPF 95
>07_03_0079 + 13169773-13170861
Length = 362
Score = 27.1 bits (57), Expect = 4.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 133 AGLILMALSVIPFLPADIFVVLWP 62
AGL+ AL IP LP+ + +V WP
Sbjct: 44 AGLLYFALVGIPALPSILRLVAWP 67
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 27.1 bits (57), Expect = 4.2
Identities = 16/71 (22%), Positives = 37/71 (52%)
Frame = +3
Query: 111 KAIKIRPARLKGIQTKHSKFVRDLVRELVGHS*YEKRAMELLKVSKDKRALKFLKRRLGT 290
+A + + A L+ + S+ ++LV L G EK+ +ELL + +++ ++LK +
Sbjct: 639 EAYQTKAASLEAVMESASEKEKELVESL-GQITEEKKKLELLVLEYEEKTEEYLKEKQSL 697
Query: 291 HIRAKRKREEL 323
R + + ++
Sbjct: 698 EERLQSQESKV 708
>02_01_0411 - 2998806-3000938
Length = 710
Score = 27.1 bits (57), Expect = 4.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -1
Query: 197 NKFTNQIA--DKLRVFGLNAL*PSWPNFNGFVCNTLFASGYL 78
NKFT ++A + + L AL SW NFNG + ++++ L
Sbjct: 325 NKFTGELAKVNFSNLPNLKALDFSWNNFNGTIPESIYSCSNL 366
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 249 DKRALKFLKRRLGTHIRAKRKREELRNV 332
DK+ LKFL R TH + E++ N+
Sbjct: 791 DKKHLKFLNLRCTTHTKESYTMEDITNI 818
>05_01_0113 + 760584-760861,760964-761021,761229-761306
Length = 137
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 57 RKGHKTTKISAGKKGITDKAIKIRPARL 140
RKGHK +ISA K+ T + +K P L
Sbjct: 81 RKGHKCDRISAEKRANTVELMKKMPQML 108
>01_05_0108 +
18183250-18183336,18183451-18183962,18184074-18184245,
18184984-18185022,18185117-18185185,18185281-18185397,
18185842-18186056,18187085-18187240,18187328-18187527,
18187927-18188084,18188321-18188417,18188738-18188829,
18189018-18189191
Length = 695
Score = 26.2 bits (55), Expect = 7.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 145 AFKPNTLSLSAIWFVNLLGTLSMRRGQWN 231
+FK +LS S I+F+NLLG + R W+
Sbjct: 573 SFKDRSLS-SGIFFLNLLGAVEPRVVNWS 600
>09_01_0024 + 438288-438542,439020-439069,440096-440351
Length = 186
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 210 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRN 329
+E R E LK ++++ A K LKR+ + ++KR + N
Sbjct: 124 FELRREERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNN 163
>08_01_1068 +
10899965-10900129,10900408-10900562,10900688-10900996,
10901870-10901939,10902504-10902802,10904305-10904724,
10906063-10906324
Length = 559
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -3
Query: 228 PLPSSHTKSAQQVHEPNRGQT*SVWFEC 145
P+ HT Q + N QT S W +C
Sbjct: 436 PVAPQHTSFDQMCYATNSEQTMSAWLDC 463
>04_03_0934 -
20912932-20912997,20913131-20913172,20913477-20913845,
20913949-20914080
Length = 202
Score = 25.8 bits (54), Expect = 9.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 312 ASSSRGCVCRGDASRT*GRAYLSIL*AIPLPSSHTKSAQQVHEPNRGQ 169
A ++ G A+ + A++S A+PLP+ T SA + P GQ
Sbjct: 116 AEANAGAPSPAAAAASTSTAFISSSPAVPLPAGVTDSATVLPMPTPGQ 163
>03_06_0682 - 35516081-35518303
Length = 740
Score = 25.8 bits (54), Expect = 9.8
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +3
Query: 129 PARLKGIQTKHSKFVRDLVRELVGHS*YEKRAMELLK----VSKDKRALKFLKRRLGTHI 296
P + ++ + F+++++ +S EKR ELL+ ++K LG+ +
Sbjct: 324 PKEVHHLKDLNENFIKEIIERSAFNSEEEKRQSELLEMVGDIAKKCSGSPLAATALGSTL 383
Query: 297 RAKRKREELRNVL 335
R K ++E +L
Sbjct: 384 RTKTTKKEWEAIL 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,343,112
Number of Sequences: 37544
Number of extensions: 171224
Number of successful extensions: 373
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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