Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E07
         (353 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.               130   1e-30
BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36 p...   130   1e-30
BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36 p...   130   1e-30
BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36 p...   130   1e-30
AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36 p...   130   1e-30
AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36 p...    62   6e-10
BC008573-1|AAH08573.1|   48|Homo sapiens HIG2 protein protein.         28   9.5  

>CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.
          Length = 105

 Score =  130 bits (314), Expect = 1e-30
 Identities = 68/110 (61%), Positives = 82/110 (74%)
 Frame = +3

Query: 24  MAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVRELVGH 203
           MA R+ +A+GL KGHK TK             K R +R +G  TKH+KFVRD++RE+ G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 204 S*YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRNVLTQMRKA 353
           + YE+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREEL NVL  MRKA
Sbjct: 51  APYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 100


>BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  130 bits (314), Expect = 1e-30
 Identities = 68/110 (61%), Positives = 82/110 (74%)
 Frame = +3

Query: 24  MAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVRELVGH 203
           MA R+ +A+GL KGHK TK             K R +R +G  TKH+KFVRD++RE+ G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 204 S*YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRNVLTQMRKA 353
           + YE+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREEL NVL  MRKA
Sbjct: 51  APYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 100


>BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  130 bits (314), Expect = 1e-30
 Identities = 68/110 (61%), Positives = 82/110 (74%)
 Frame = +3

Query: 24  MAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVRELVGH 203
           MA R+ +A+GL KGHK TK             K R +R +G  TKH+KFVRD++RE+ G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 204 S*YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRNVLTQMRKA 353
           + YE+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREEL NVL  MRKA
Sbjct: 51  APYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 100


>BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  130 bits (314), Expect = 1e-30
 Identities = 68/110 (61%), Positives = 82/110 (74%)
 Frame = +3

Query: 24  MAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVRELVGH 203
           MA R+ +A+GL KGHK TK             K R +R +G  TKH+KFVRD++RE+ G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 204 S*YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRNVLTQMRKA 353
           + YE+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREEL NVL  MRKA
Sbjct: 51  APYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 100


>AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  130 bits (314), Expect = 1e-30
 Identities = 68/110 (61%), Positives = 82/110 (74%)
 Frame = +3

Query: 24  MAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVRELVGH 203
           MA R+ +A+GL KGHK TK             K R +R +G  TKH+KFVRD++RE+ G 
Sbjct: 1   MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50

Query: 204 S*YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRNVLTQMRKA 353
           + YE+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREEL NVL  MRKA
Sbjct: 51  APYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 100


>AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36
           protein.
          Length = 32

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 28/32 (87%), Positives = 31/32 (96%)
 Frame = +3

Query: 234 LKVSKDKRALKFLKRRLGTHIRAKRKREELRN 329
           LKVSKDKRALKF+K+R+GTHIRAKRKREEL N
Sbjct: 1   LKVSKDKRALKFIKKRVGTHIRAKRKREELSN 32


>BC008573-1|AAH08573.1|   48|Homo sapiens HIG2 protein protein.
          Length = 48

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 216 KRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRN 329
           +R+   + VS+D+ A+  L      H++ K+KR+ L N
Sbjct: 8   RRSFAFVAVSRDRTAVPSLGHSARLHLKKKKKRKSLFN 45


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,386,935
Number of Sequences: 237096
Number of extensions: 897313
Number of successful extensions: 5836
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5831
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2075554296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)