Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E07
         (353 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...   108   1e-24
Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical pr...    29   0.71 
Z78059-4|CAB01487.2|  995|Caenorhabditis elegans Hypothetical pr...    29   0.71 
AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein.     29   0.71 
AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.     29   0.71 
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z81134-4|CAB03451.1|  322|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z66565-10|CAB76415.1|  281|Caenorhabditis elegans Hypothetical p...    28   1.6  
AL032659-2|CAB82215.1|  281|Caenorhabditis elegans Hypothetical ...    28   1.6  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    28   1.6  
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    28   2.2  
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p...    27   5.0  
Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical p...    27   5.0  
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical...    27   5.0  
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ...    26   6.6  
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.      26   6.6  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score =  108 bits (260), Expect = 1e-24
 Identities = 55/104 (52%), Positives = 74/104 (71%)
 Frame = +3

Query: 42  IAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVRELVGHS*YEKR 221
           +A+GL KGH  T++           +K R  R KG+ +K +K VR+LVRE+ G + YE+R
Sbjct: 9   LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 222 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELRNVLTQMRKA 353
            +E+L++SKDKRALKFLKRR+GTH RAK KREEL+NV+   RKA
Sbjct: 59  VLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRKA 102


>Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical
           protein C34B4.1b protein.
          Length = 1099

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 148 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 44
           MPF L G  L+AL++  FLP   + +LW  +R I+
Sbjct: 691 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 724


>Z78059-4|CAB01487.2|  995|Caenorhabditis elegans Hypothetical
           protein C34B4.1a protein.
          Length = 995

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 148 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 44
           MPF L G  L+AL++  FLP   + +LW  +R I+
Sbjct: 587 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 620


>AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein.
          Length = 1045

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 148 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 44
           MPF L G  L+AL++  FLP   + +LW  +R I+
Sbjct: 637 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 670


>AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.
          Length = 1099

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 148 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 44
           MPF L G  L+AL++  FLP   + +LW  +R I+
Sbjct: 691 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 724


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +3

Query: 126 RPARLKGIQTKHSKFVRDLVRELVGHS*YEKRAMELLKVSKDKRAL 263
           R   LK ++  HS   + ++ +L  H+ YE+RA+ L ++ + ++AL
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 724


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +3

Query: 126 RPARLKGIQTKHSKFVRDLVRELVGHS*YEKRAMELLKVSKDKRAL 263
           R   LK ++  HS   + ++ +L  H+ YE+RA+ L ++ + ++AL
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 721


>Z81134-4|CAB03451.1|  322|Caenorhabditis elegans Hypothetical
           protein T28D6.7 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 10  VNPKSWLPDLKSQLVCEKATKRQRYPLAKRVLQTKPLKLGQL 135
           V  +SWL   K +L+C  +   + YP AK  ++   L  G L
Sbjct: 168 VMQRSWLETDKDRLICSHSVCHEDYPPAKGCIRATVLISGYL 209


>Z66565-10|CAB76415.1|  281|Caenorhabditis elegans Hypothetical
           protein Y71H9A.3 protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -1

Query: 332 YVPELFTLPLRADVCAEATLQELKGALIFR 243
           Y+  LFTLPL A  C +  +QE + A+IFR
Sbjct: 35  YLVVLFTLPLSAFFCLK-VVQEYERAVIFR 63


>AL032659-2|CAB82215.1|  281|Caenorhabditis elegans Hypothetical
           protein Y71H9A.3 protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -1

Query: 332 YVPELFTLPLRADVCAEATLQELKGALIFR 243
           Y+  LFTLPL A  C +  +QE + A+IFR
Sbjct: 35  YLVVLFTLPLSAFFCLK-VVQEYERAVIFR 63


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
            protein H06I04.3a protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
 Frame = +3

Query: 57   RKGHKTTKISAGKKGITDKAIKIRPARLKGI----QTKHSKFVRDLVRELVGHS*YEKRA 224
            R   K  +  A K+    + ++    + +GI    Q +HS+ VR++ +     +  EK+ 
Sbjct: 701  RPSKKVAEAKARKQKKMQRKLESAKKKAEGILENDQMEHSEKVREMKKVYANATRKEKKK 760

Query: 225  MELLKVSKDKRA--------LKFLKRRLGTHIRAKRKREELR 326
            +EL++++K K+          K +  R+   +RA + +E+ +
Sbjct: 761  VELVRMTKGKKGKTGRPNGQYKLVDSRMKKDLRAAKAKEKTK 802


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = +3

Query: 57  RKGHKTTKISAGKKGITDKAIKIRPARLKGI----QTKHSKFVRDLVRELVGHS*YEKRA 224
           R   K  +  A K+    + ++    + +GI    Q +HS+ VR++ +     +  EK+ 
Sbjct: 701 RPSKKVAEAKARKQKKMQRKLESAKKKAEGILENDQMEHSEKVREMKKVYANATRKEKKK 760

Query: 225 MELLKVSKDKR 257
           +EL++++K K+
Sbjct: 761 VELVRMTKGKK 771


>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
           protein C24H11.7 protein.
          Length = 1820

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 249 DKRALKFLKRRLGTHIRAKRKREELRNVLTQMRK 350
           +KR  +  KR+L  HI  K K  E  NV T+M K
Sbjct: 249 EKRQKRKKKRQLSVHIETKAKEPE--NVPTEMTK 280


>Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical
           protein T06E6.5 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 170 KLRVFGLNAL*PSWPNFNGFVCNTLFASGYLCRFVAFSQ 54
           KL V GL +L   W   +  + N  F +  +C FV FS+
Sbjct: 198 KLDVTGLTSL-TQWRKAHTVIMNDFFITADICDFVNFSE 235


>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
           protein C24H11.7 protein.
          Length = 1820

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 249 DKRALKFLKRRLGTHIRAKRKREELRNVLTQMRK 350
           +KR  +  KR+L  HI  K K  E  NV T+M K
Sbjct: 249 EKRQKRKKKRQLSVHIETKAKEPE--NVPTEMTK 280


>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
           protein.
          Length = 1173

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 13  NPKSWLPDLKSQLVCEKATKRQRY-PLAKRVLQTKPLKLGQLG 138
           N K  + DL+ +L  EKA K+     L + + + +PLK G+ G
Sbjct: 813 NDKQTIADLRKKLDLEKAHKKAVINKLEEEMAKRQPLKKGEKG 855


>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
          Length = 1173

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 13  NPKSWLPDLKSQLVCEKATKRQRY-PLAKRVLQTKPLKLGQLG 138
           N K  + DL+ +L  EKA K+     L + + + +PLK G+ G
Sbjct: 813 NDKQTIADLRKKLDLEKAHKKAVINKLEEEMAKRQPLKKGEKG 855


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,930,197
Number of Sequences: 27780
Number of extensions: 147820
Number of successful extensions: 439
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)