Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E06
         (137 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    24   3.2  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    23   4.2  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    23   5.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    22   9.6  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 31   CVYCVWYYA 57
            C +C WYYA
Sbjct: 1166 CTFCCWYYA 1174


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 132 NTRE*LQVPVIFIRQPLVQTCKLPPCIIPNTIH 34
           N +E + +PV  +  P+ ++C+ PP I P   H
Sbjct: 605 NPKENITLPVQSLAFPVTKSCR-PPPIPPRESH 636


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 82  QWLANEDDGNLELFSG 129
           +WL +EDD +L L  G
Sbjct: 312 KWLVDEDDNSLRLIYG 327


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +2

Query: 11  QSKF*DNACIVFGIMHGGSLQVCTS 85
           +S+  D  C++  ++H G+++VC +
Sbjct: 319 ESRQEDVFCLLAALLHLGNIEVCAT 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,367
Number of Sequences: 5004
Number of extensions: 6952
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)