Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E06
         (137 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0316 + 4251465-4251590,4251664-4251719,4252973-4253087,425...    26   3.7  
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432...    26   3.7  
05_03_0231 - 10696096-10696315,10696348-10696697                       25   8.5  

>04_01_0316 +
           4251465-4251590,4251664-4251719,4252973-4253087,
           4253174-4253417,4254189-4254325,4255006-4255065,
           4255336-4255460,4256021-4256048,4256267-4256336,
           4256513-4256565,4256966-4257025,4257498-4257544,
           4257617-4257741,4258572-4258686,4258778-4258826,
           4260415-4260471,4261126-4261209,4261363-4261442,
           4262005-4262094,4262252-4262375
          Length = 614

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +2

Query: 32  ACIVFGIMHGGSLQVCTS---GWRMKMTGTWSYSLV 130
           AC  F   HG  L   ++   GWRM M   W++SL+
Sbjct: 554 ACEAFSRHHGEELLENSALLWGWRMFMIKLWNHSLL 589


>02_05_0232 +
           27041793-27042087,27042822-27042943,27043098-27043219,
           27043601-27043705,27043828-27044257,27044356-27044517,
           27044565-27045260,27045349-27046128,27046441-27046654,
           27047621-27047981,27047993-27048140,27048276-27048419,
           27048784-27048888,27049749-27049794,27050089-27050255,
           27050338-27050490,27050654-27050950,27051053-27051220,
           27051298-27051363,27051451-27051927,27052031-27052768,
           27052935-27053120
          Length = 1993

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 103 HLHSPATGADLQATTMHNTKHNTRIVSKFTLK 8
           H+H PA    +    +H TK NT+ V+ +  K
Sbjct: 88  HVHCPAQMIPMMGAKVHYTKMNTKQVNDYRNK 119


>05_03_0231 - 10696096-10696315,10696348-10696697
          Length = 189

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 35  CIVFGIMHGGSLQVCTSGWRMKMTGTWSYSLVL 133
           C+ F  +  G LQV T  W ++ +G+ +   +L
Sbjct: 152 CVNFPALSEGVLQVKTMSWLLRTSGSGTQCCIL 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,946,590
Number of Sequences: 37544
Number of extensions: 48994
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 14,793,348
effective HSP length: 26
effective length of database: 13,817,204
effective search space used: 262526876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)