Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E06
         (137 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z74030-11|CAA98446.1|  481|Caenorhabditis elegans Hypothetical p...    25   7.4  
Z22174-3|CAE17880.1|  125|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U28928-4|AAA68337.2|  489|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF022974-9|AAC48035.3|  566|Caenorhabditis elegans Hypothetical ...    25   7.4  
Z82266-12|CAB05185.2| 1080|Caenorhabditis elegans Hypothetical p...    25   9.7  

>AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical
           protein C10E2.2 protein.
          Length = 501

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 124 RIAPGSRHLHSPATGADLQATTMHNTKHNTRIVSKFTLKL 5
           +I P ++HLH+   G D++   M   +   ++V KF  KL
Sbjct: 201 QIDPAAQHLHTLGNGVDIE--KMKKRRMTPQVVDKFHEKL 238


>Z74030-11|CAA98446.1|  481|Caenorhabditis elegans Hypothetical
           protein D1054.13 protein.
          Length = 481

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 32  ACIVFGIMHGGSLQVCTSGWRMK 100
           +CIV  +  G SL +C + WR +
Sbjct: 130 SCIVVPLCTGMSLSLCMTSWRRR 152


>Z22174-3|CAE17880.1|  125|Caenorhabditis elegans Hypothetical
           protein K01B6.4 protein.
          Length = 125

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = -2

Query: 97  HSPATGADLQATTMHNTKHNTR---IVSKFTLKLS 2
           H   T  DLQ+ T+    HNT+   +  K  LK+S
Sbjct: 15  HHILTDCDLQSVTIRKDDHNTKEDPVTEKKNLKVS 49


>U28928-4|AAA68337.2|  489|Caenorhabditis elegans Hypothetical
           protein C44B7.6a protein.
          Length = 489

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 127 QRIAPGSRHLHSPATGADLQATTMHNTKHNTRIVSKF 17
           +RI+ G  H+ +     DL    MHN +   ++VSK+
Sbjct: 18  RRISEGFLHMTNADRMLDLHDIGMHNVQSEYQLVSKW 54


>AF022974-9|AAC48035.3|  566|Caenorhabditis elegans Hypothetical
           protein F26G5.1 protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 115 PGSRHLHSPATGADLQATTMHNT 47
           PGSR L  PA   D+    +HN+
Sbjct: 336 PGSRALQQPAQSIDIVDKELHNS 358


>Z82266-12|CAB05185.2| 1080|Caenorhabditis elegans Hypothetical
            protein F23B2.11 protein.
          Length = 1080

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 115  PGSRHLHSPATGADLQATTMHNTKHNTRIVSKFTLKLS 2
            PG+     P TG+  Q  T    +  T+  S  T+ LS
Sbjct: 1033 PGTGSTAKPGTGSTSQPVTASTVQATTKSTSSATITLS 1070


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,658
Number of Sequences: 27780
Number of extensions: 41278
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 12,740,198
effective HSP length: 26
effective length of database: 12,017,918
effective search space used: 228340442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)