Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E05
         (161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   1.8  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    23   4.1  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    23   4.1  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    23   5.4  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    23   7.2  

>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 158 PSTENPLANDSSFQYVFPVSLPFLLPV 78
           P+  NPLA  ++    F VSLP  +P+
Sbjct: 27  PAKVNPLAQPNTCVAYFDVSLPGSMPI 53


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 161 YPSTENPLANDSSFQ 117
           YP T  P  ND SFQ
Sbjct: 682 YPGTSKPQLNDISFQ 696


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 146 NPLANDSSFQYVFPVSLPFLLPVY 75
           +P  N SS + V+P S+P+   +Y
Sbjct: 163 DPYENGSSNEIVYPESMPYQTNLY 186


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 155 STENPLANDSSFQYVFPVSLPFLLP 81
           S EN + +  + +  FP++LP +LP
Sbjct: 18  SAENKVDSSKNTEANFPITLPKVLP 42


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 158 PSTENPLANDSSFQY 114
           P+TE+  ++DSSF Y
Sbjct: 370 PATESETSDDSSFSY 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.129    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 508,008
Number of Sequences: 5004
Number of extensions: 5376
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)