Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E05
         (161 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0469 - 3613062-3613745,3613952-3614512,3614600-3614690,361...    26   4.7  
05_01_0488 - 4070506-4072277,4072455-4072557                           25   6.3  

>03_01_0469 -
           3613062-3613745,3613952-3614512,3614600-3614690,
           3614782-3614870,3614962-3615027,3615309-3615423,
           3615521-3615966
          Length = 683

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 113 HIGKMNHSLEDSPLTD 160
           HI  MNH+ E SP+TD
Sbjct: 339 HIQYMNHNSETSPITD 354


>05_01_0488 - 4070506-4072277,4072455-4072557
          Length = 624

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 92  KEVKQETHIGKMNHSLEDSPLT 157
           KE++Q  H    NHSLE S L+
Sbjct: 427 KELEQAVHDSLQNHSLEKSSLS 448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.129    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,121
Number of Sequences: 37544
Number of extensions: 28471
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 14,793,348
effective HSP length: 34
effective length of database: 13,516,852
effective search space used: 256820188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)