Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E05
         (161 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   1.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   2.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   2.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   2.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   4.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   7.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    18   9.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 109 NTYWKDESFA 138
           N YWKDE  A
Sbjct: 89  NQYWKDERLA 98



 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 18  AVSFKYTYNLGFF 56
           ++SFK   N+G+F
Sbjct: 232 SLSFKLQRNIGYF 244


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -3

Query: 126 IFPICVSCF 100
           +FP+C  CF
Sbjct: 411 VFPVCFVCF 419


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -3

Query: 126 IFPICVSCF 100
           +FP+C  CF
Sbjct: 411 VFPVCFVCF 419


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -3

Query: 126 IFPICVSCF 100
           +FP+C  CF
Sbjct: 349 VFPVCFVCF 357


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 74  YKQVIEKEVKQETHIGKMNH 133
           Y+  +EK+   E  IGK  H
Sbjct: 253 YQADVEKQECTECPIGKFKH 272


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 6   SGERAVSFKYTYNLGFF 56
           + + A +F YTYN   +
Sbjct: 250 AAKMAKAFTYTYNYSMY 266


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 116 IGKMNHSLEDSPLTD 160
           I  +NH  ED+ L D
Sbjct: 222 IDAINHMFEDARLLD 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.129    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,333
Number of Sequences: 438
Number of extensions: 383
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 33
effective length of database: 131,889
effective search space used:  2637780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.6 bits)