Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E04
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...   126   8e-31
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...   122   2e-29
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   1.2  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    26   1.6  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   2.7  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   3.6  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    25   4.8  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    24   6.3  
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    24   6.3  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   8.3  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    24   8.3  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    24   8.3  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score =  126 bits (305), Expect = 8e-31
 Identities = 63/112 (56%), Positives = 78/112 (69%)
 Frame = +2

Query: 23  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 202
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 203 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKVLKAQQASIK 358
           E +RL + KKTV+R YGG L    VK RIVRAFLIEEQKIVK    Q +S K
Sbjct: 61  EFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVKQKLKQLSSQK 112


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score =  122 bits (294), Expect = 2e-29
 Identities = 62/112 (55%), Positives = 78/112 (69%)
 Frame = +2

Query: 23  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 202
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 203 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKVLKAQQASIK 358
           E +RL + +K V+R YGG L    VK RIVRAFLIEEQKIVK  K +Q S K
Sbjct: 61  EFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK-QKLKQMSQK 111


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 44  RRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR 151
           RR  + N KS+++R    PG  L  +   KPK   R
Sbjct: 244 RREQNRNQKSSKQRPFHKPGNSLASRLGSKPKSFKR 279


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 44  RRRLSYNTKSN-QRRIVRTPGGRLVY 118
           R+  SY T +   +RIV+ PGGR +Y
Sbjct: 161 RQHESYATSARGSKRIVQVPGGRRIY 186


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 208 FSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPKSATG 348
           FSS L    + +R ++  L++     HRQ F+  RTE+  + ++A+G
Sbjct: 22  FSSTLSNPLTYSRSYKRVLARWGIRVHRQRFVSPRTEE-AAARTASG 67


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 138 LGFLTYWYTKRPPGVRTILL 79
           +GFL Y+Y K P G R  +L
Sbjct: 133 VGFLPYFYVKAPVGFRPEML 152


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 13  KLQNGAAAYIQTTFVLQHKVKPKENSTN 96
           KLQN    Y+    + Q KV PK   TN
Sbjct: 504 KLQNMPGTYVDKWTLDQEKVMPKNLKTN 531


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 149 RCGQCKSKLRGIQPARPAERSR 214
           RC +CK   +G    RP  R R
Sbjct: 341 RCSRCKKSKKGCDRQRPCGRCR 362


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 304 QESSDDALLHAFVTENTSINALHCLLAVAETRTLCGPR 191
           Q++S+D++ H F + N  IN    L A+        PR
Sbjct: 79  QDASEDSINHMFESINPPINLAAFLTAMGSMLCRISPR 116


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 221 YRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKVLK 337
           +R+K   R+ G ++C  C+K+     F+   Q  +KV +
Sbjct: 76  FRRKHHCRICGKIICKYCLKE--APGFIFRLQGSIKVCR 112


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
 Frame = +2

Query: 119 QYVKKPKKIPRCGQCKSKLRG-------IQPARPAERSR---LCYRKKTVKRVYG 253
           Q + K KK P C  C SK          I+ + P ++S+   LC R   V R YG
Sbjct: 659 QKILKLKKTPICRWCHSKRSSEWFVAPPIEESSPKDKSKIVALCQRCGYVWRYYG 713


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 156 PHLGIFLGFLTYWYTKRPPGVRT 88
           PH+G +LG L  W   +    RT
Sbjct: 26  PHIGNYLGSLKQWVQLQEEAART 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,373,832
Number of Sequences: 5004
Number of extensions: 24433
Number of successful extensions: 75
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)