Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E01
         (259 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.13 
SPBC1685.03 |sec11||signal peptidase subunit Sec11 |Schizosaccha...    26   0.95 
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    24   2.9  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    23   5.1  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    23   6.7  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    23   8.9  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    23   8.9  

>SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 107

 Score = 28.7 bits (61), Expect = 0.13
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 60  HKTHELVSHIQFSGQHHQALFSKKIFKNYVTHVG 161
           + T+ + SH QF G H+++     +   Y +HVG
Sbjct: 41  YSTNSICSHYQFFGGHYESFELLVVIVYYFSHVG 74


>SPBC1685.03 |sec11||signal peptidase subunit Sec11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 113 LMVLSTELYMAYKFMSFMLFTRNPIYFRKIELVSPS 6
           L+VLS+  YM YK +SF+    +P+     E + PS
Sbjct: 17  LLVLSSA-YMGYKTLSFVTDCESPVVVVLSESMEPS 51


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +2

Query: 83  PYTIQWTTPSSIIFQK 130
           PY + + +PS+++FQ+
Sbjct: 87  PYNLNYVSPSTVVFQR 102


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 105 VVH*IVYGLQVHEFYVVYTEPYLFSK 28
           ++H ++  L V E+ + +T P+L+ K
Sbjct: 339 IIHGLLLDLTVFEYVLEHTLPHLYQK 364


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 30  SKINRVPCKQHKTHELVSHIQFSGQHHQALFSKKIFKNYVTHV 158
           S I+ +P K    + L++  QFS  ++   ++ K+F   V H+
Sbjct: 275 SLIHALPPKDITFYLLMTFWQFSSDNNHFYYNTKLFAAKVHHL 317


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 54  KQHKTHELVSHIQFSGQHHQALFS 125
           K H+  ++V+ +QF  QH   L S
Sbjct: 230 KYHRHTDIVNDVQFHPQHEALLAS 253


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 97  LNCIWLTSS*VLCCLHGTLFIFE 29
           L C WLTSS +       + IFE
Sbjct: 252 LACCWLTSSKIAVATADAISIFE 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,120,177
Number of Sequences: 5004
Number of extensions: 20594
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)