Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E01
         (259 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188...    27   2.7  
02_05_0665 - 30720842-30721003,30721290-30721448,30721555-307216...    27   2.7  
10_08_0497 - 18336819-18337140,18337226-18337360,18337579-183376...    26   4.8  
11_06_0310 + 22274762-22275412,22275515-22275725,22276713-222773...    25   6.3  
07_01_1209 + 11535266-11535565,11536524-11537009                       25   8.4  
05_05_0168 + 22875488-22876072                                         25   8.4  
05_01_0539 + 4653028-4653158,4654329-4654973,4655323-4655448,465...    25   8.4  
03_03_0144 + 14826797-14827435,14827561-14827771,14827861-148281...    25   8.4  

>10_01_0167 +
           1876793-1877402,1877423-1877642,1877760-1879534,
           1880019-1880199,1881313-1881529
          Length = 1000

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 49  RVNNIKLMNL*AIYNSVDNTIKHYFP 126
           ++++ KL +L  IYNS D+ ++ +FP
Sbjct: 723 KLSSYKLQSLHIIYNSSDDLLERWFP 748


>02_05_0665 -
           30720842-30721003,30721290-30721448,30721555-30721687,
           30722042-30722227,30722377-30722906
          Length = 389

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 232 CCKCYSTFIINCVPAAPPVFHTFXPTCVT*FLNI 131
           CC C S++      +A P  H F  TC+T +L +
Sbjct: 338 CCICLSSYEDGAELSALPCNHHFHWTCITKWLRM 371


>10_08_0497 -
           18336819-18337140,18337226-18337360,18337579-18337673,
           18337759-18337845,18337923-18338129,18338209-18338535,
           18338711-18338803,18338861-18339175,18339283-18339792,
           18339889-18339960,18341209-18341256,18341427-18341551,
           18341640-18341661
          Length = 785

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 127 KKYLKIMLHTWXR 165
           +KY+K +LHTW R
Sbjct: 255 RKYVKALLHTWSR 267


>11_06_0310 +
           22274762-22275412,22275515-22275725,22276713-22277388,
           22277739-22277816,22278228-22278573
          Length = 653

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 84  HIQFSGQHHQALFSKKIFKNYVTHVGKNV*NTGGAAGTQF 203
           ++ F+   +++L  +K  +N+V H G+ +   GG  GTQF
Sbjct: 149 YVPFANAPYKSLTVEKAVQNWVRHEGRLLRFPGG--GTQF 186


>07_01_1209 + 11535266-11535565,11536524-11537009
          Length = 261

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 69  HELVSHIQFSGQHHQALFSKKIFKNYVTHVGKNV 170
           H   S  +F G+H Q +F + + +    HVG  V
Sbjct: 157 HWQSSRARFPGKHEQFVFDRIVKEGVPPHVGATV 190


>05_05_0168 + 22875488-22876072
          Length = 194

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = -1

Query: 232 CCKCYSTFIIN-CVPAAPPVFHTFXPTCV 149
           C  C S  +    V A PP  H F P CV
Sbjct: 127 CSICISALVAGEKVKALPPCGHCFHPDCV 155


>05_01_0539 +
           4653028-4653158,4654329-4654973,4655323-4655448,
           4655537-4655813,4655916-4656143
          Length = 468

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 235 VCCKCYSTFIINCVPAAPPVFHTFXPTCVT*FLNI 131
           VCC C + ++ N      P  H F   CV  +L I
Sbjct: 394 VCCICLARYVDNDDLRELPCAHFFHKDCVDKWLKI 428


>03_03_0144 +
           14826797-14827435,14827561-14827771,14827861-14828155,
           14828285-14828674,14829131-14829208,14829296-14829518
          Length = 611

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 84  HIQFSGQHHQALFSKKIFKNYVTHVGKNV*NTGGAAGTQFIIKVE*HLQH 233
           ++ ++   H++L  +K  +N+V + GK     GG  GTQF    + ++ H
Sbjct: 145 YVHYANIPHKSLTVEKAIQNWVHYEGKVFRFPGG--GTQFPQGADKYIDH 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,747,054
Number of Sequences: 37544
Number of extensions: 115565
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)