Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_E01
         (259 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   1.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   1.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   2.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    20   4.3  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    20   4.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    20   4.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    20   5.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    20   5.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    19   7.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    19   9.8  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    19   9.8  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    19   9.8  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    19   9.8  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    19   9.8  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    19   9.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    19   9.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 178 VFHTFXPTCV 149
           +FHT+ PTC+
Sbjct: 248 LFHTYIPTCL 257


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 92  IQWTTPSSIIFQK 130
           ++WT P +I F+K
Sbjct: 802 VRWTAPEAIAFRK 814


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 6/11 (54%), Positives = 11/11 (100%)
 Frame = +1

Query: 88  YNSVDNTIKHY 120
           Y+S++NT+K+Y
Sbjct: 301 YSSLENTLKYY 311


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 4   HEGETNSIFRK*IGFRVNNIKLMNL 78
           HE  T ++    +GF V NI +  L
Sbjct: 296 HEALTEALPGDNVGFNVKNISVKEL 320


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
          1-alpha protein.
          Length = 119

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 4  HEGETNSIFRK*IGFRVNNIKLMNL 78
          HE  T ++    +GF V NI +  L
Sbjct: 7  HEALTEALPGDNVGFNVKNISVKEL 31


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 247 SCGNVCCKC 221
           S GNV CKC
Sbjct: 100 SSGNVYCKC 108


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 126 KKIFKNYVTHV 158
           KK++KNY+ ++
Sbjct: 114 KKLYKNYIINI 124


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 126 KKIFKNYVTHV 158
           KK++KNY+ ++
Sbjct: 114 KKLYKNYIINI 124


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 243 VVMYVVNAXXXXXXTVCPRLRPCFIHSXPRV 151
           VV+  V+        + P +R  FIH  PR+
Sbjct: 322 VVVLNVHFRSPQTHVMAPWVRRVFIHVLPRL 352


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 223 CYSTFIINCVPAAPPVFHTFXP 158
           CY+   I  +P   PV++   P
Sbjct: 103 CYNINYIEQIPVPVPVYYGNFP 124


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 223 CYSTFIINCVPAAPPVFHTFXP 158
           CY+   I  +P   PV++   P
Sbjct: 103 CYNINYIEQIPVPVPVYYGNFP 124


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 223 CYSTFIINCVPAAPPVFHTFXP 158
           CY+   I  +P   PV++   P
Sbjct: 103 CYNINYIEQIPVPVPVYYGNFP 124


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 223 CYSTFIINCVPAAPPVFHTFXP 158
           CY+   I  +P   PV++   P
Sbjct: 103 CYNINYIEQIPVPVPVYYGNFP 124


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 223 CYSTFIINCVPAAPPVFHTFXP 158
           CY+   I  +P   PV++   P
Sbjct: 103 CYNINYIEQIPVPVPVYYGNFP 124


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 139 KIMLHTWXRMYET 177
           K  LH W  +Y+T
Sbjct: 254 KSTLHCWATIYKT 266


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 139 KIMLHTWXRMYET 177
           K  LH W  +Y+T
Sbjct: 254 KSTLHCWATIYKT 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,888
Number of Sequences: 438
Number of extensions: 1488
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4636803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)