Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D24
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   195   2e-51
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   194   4e-51
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   194   5e-51
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   1.0  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   1.8  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   4.1  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   4.1  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   5.5  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    25   5.5  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    24   7.2  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    24   7.2  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    24   7.2  
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo...    24   7.2  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    24   7.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   9.5  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  195 bits (476), Expect = 2e-51
 Identities = 85/115 (73%), Positives = 98/115 (85%)
 Frame = +2

Query: 44  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 223
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 224 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRVIYDVKGRFTIHRIT 388
           V  I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FR++YD+KGRFT+HRIT
Sbjct: 61  VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRIT 115


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  194 bits (473), Expect = 4e-51
 Identities = 84/115 (73%), Positives = 98/115 (85%)
 Frame = +2

Query: 44  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 223
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 224 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRVIYDVKGRFTIHRIT 388
           V  I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FR++YD+KGRFT+HRIT
Sbjct: 61  VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRIT 115


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  194 bits (472), Expect = 5e-51
 Identities = 84/115 (73%), Positives = 98/115 (85%)
 Frame = +2

Query: 44  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 223
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 224 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRVIYDVKGRFTIHRIT 388
           V  I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FR++YD+KGRFT+HRIT
Sbjct: 61  VKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRIT 115


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -3

Query: 369 NLPFTSYITRNNSFVFSMDTTSINPAGYVGSVR--TFPSTLMRRCFTILSTS 220
           +LP   ++T   +F  ++  T+    G + S +  T  S ++  CFTI+STS
Sbjct: 605 SLPELDFLTSVFNFPLALRNTATRILGIILSTKDSTRISEVLSSCFTIISTS 656


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +2

Query: 113 GGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYP 292
           G + A RP +G  K+      V  LRN    A    +   IV  R   ++ + RT P+  
Sbjct: 201 GNLNARRPQSGLLKIT-----VGSLRNVTHSAGISKQTEMIVAIRAEDLE-RARTRPSRT 254

Query: 293 AGFMDV--VSIEKTNELFRVIYDVK 361
             F +   + +EKTNE+  V+Y+ K
Sbjct: 255 DRFNETFEIDLEKTNEVEIVVYEKK 279


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 173 LVIFLRNRLKYALTGNEVLKIV 238
           L+ F+  RL++ LT  E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 348 ITRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITS 172
           I RN S+   MD      + YV  +  + S  +  C  +  ++LP S YLS  R ++ S
Sbjct: 273 ICRNYSY---MDILLSKKSKYVKKLEKYWSIYLSNCKKLGISTLPPSNYLSPNRAELES 328


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 201 LSRFRRKITSGKHSRSLWGPVEGRGAYTPPSLS 103
           L R +R   +   + S+W  +E   A+  PSLS
Sbjct: 597 LLRLKRSNRTAAQTASVWNRIERAAAHDGPSLS 629


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 120 TPPSLSNIHALGAFKRFKCFFGPRAMLNKTLNKK 19
           T  +L  IH+LG F    C FGP  +  K L  K
Sbjct: 246 TNRALKIIHSLGMFA---CIFGPLEIHTKKLQSK 276


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 158 RECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKV 259
           +ECLP   F +N+L  Y L  + VL++ K+R + V
Sbjct: 52  KECLPKFSF-QNKLDFYFLFSDRVLQLQKERKVLV 85


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 95  WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 241
           + L KLG V  P+  T  H LR+    +  L + +   ++ +EV+ I+K
Sbjct: 277 YKLKKLGVVAEPQ-LTSIHSLRDDWSFLTLLSDGITDVVSDDEVVDIIK 324


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 8   TRVSFLFKVLFNMARGPKKHLKRLNAPKAWMLDKL 112
           T    +FK +F +     +++  LN  K W   KL
Sbjct: 645 TMAETIFKTIFQIHASQLRYIDNLNVYKNWAFRKL 679


>SPAC17H9.07 |||signal recognition particle subunit Srp21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 176 VIFLRNRLKYALTGNEVLKIVKQRLI--KVDGKVRTDPTYP 292
           ++ + N+L Y  TGNE+    +Q ++   V  + + +P+ P
Sbjct: 67  LLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKKAEPSAP 107


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 283 GVSPHFPVHFDETLLHNLKHLIAGERVLEPISQED 179
           G  P  P+ F +  L  +K    G  +L PI++ED
Sbjct: 120 GEQPTEPIDFADPPLPEVKRYGEGNWLLPPIAKED 154


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 305  DVVSIEKTNELFRVIYDV 358
            +V S+EK N++F + Y+V
Sbjct: 1718 NVSSLEKCNQIFSIFYEV 1735


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,900
Number of Sequences: 5004
Number of extensions: 31641
Number of successful extensions: 99
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)