Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D24
(389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 183 4e-47
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 180 3e-46
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 180 3e-46
01_01_1101 + 8731427-8732938 29 0.99
04_04_0950 + 29609484-29611025 27 4.0
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 27 5.3
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270... 27 7.0
08_02_0803 + 21390525-21391066,21391799-21391958 27 7.0
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 27 7.0
04_04_0416 + 25042937-25043350,25044038-25044238,25044343-250445... 26 9.2
01_01_0848 + 6614403-6614768 26 9.2
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 183 bits (446), Expect = 4e-47
Identities = 83/113 (73%), Positives = 94/113 (83%)
Frame = +2
Query: 47 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 226
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 227 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRVIYDVKGRFTIHRI 385
+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FR++YD KGRF +H I
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSI 130
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 180 bits (439), Expect = 3e-46
Identities = 80/114 (70%), Positives = 95/114 (83%)
Frame = +2
Query: 44 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 223
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 224 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRVIYDVKGRFTIHRI 385
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +R++YD KGRF + +
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSV 114
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 180 bits (439), Expect = 3e-46
Identities = 80/114 (70%), Positives = 95/114 (83%)
Frame = +2
Query: 44 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 223
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 224 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRVIYDVKGRFTIHRI 385
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +R++YD KGRF + +
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSV 114
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.5 bits (63), Expect = 0.99
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -2
Query: 229 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 95
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 243 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 115
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.1 bits (57), Expect = 5.3
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -3
Query: 153 LWGPVEGRGAYTPPSLSNIHALGAFKR 73
L G G G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>09_03_0029 +
11724581-11724583,11726413-11726610,11726874-11727038,
11727217-11727283,11727645-11727812,11728070-11728194,
11728288-11728446,11728552-11728714,11728795-11728920,
11729000-11729083,11729161-11729528,11729613-11729813,
11729909-11730018,11730113-11730197,11730360-11730488,
11730580-11730667,11730805-11730893,11730968-11731267
Length = 875
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 323 KTNELFRVIYDVKGRFTIH 379
K E+FR + D K RFT+H
Sbjct: 830 KIAEVFRAVEDAKKRFTVH 848
>08_02_0803 + 21390525-21391066,21391799-21391958
Length = 233
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 219 LPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPP 112
LP Y+S RR S + RSL + R A +PP
Sbjct: 24 LPSRPYISDMRRSAFSDRLLRSLRSEISSRRAPSPP 59
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 149 HKLRECL-PLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 289
H CL PL++ +RN L + + +LKI +R +++ K+R Y
Sbjct: 545 HLEENCLEPLLVDMRNDLSCEMFNDNMLKINVKRCVRMAIKLRKKYIY 592
>04_04_0416 +
25042937-25043350,25044038-25044238,25044343-25044525,
25044975-25045084,25045317-25045376,25045620-25045911,
25046780-25046967,25047275-25048149,25048846-25049805,
25050025-25050068,25050860-25050925,25051176-25051364
Length = 1193
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 294 AGYVGSVRTFPSTLMRRCFTILST 223
A +V + R++PS L RCF T
Sbjct: 112 ADFVDAARSYPSALASRCFAFCPT 135
>01_01_0848 + 6614403-6614768
Length = 121
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 99 CWTSWAACTRRGPRR 143
CW S AA RR PRR
Sbjct: 4 CWASVAAALRRAPRR 18
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,271,791
Number of Sequences: 37544
Number of extensions: 223961
Number of successful extensions: 654
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -