Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D24
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   173   4e-44
Z93396-1|CAB07709.1|  875|Caenorhabditis elegans Hypothetical pr...    31   0.38 
AC006638-6|AAK85484.2|  160|Caenorhabditis elegans Hypothetical ...    31   0.38 
M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical pr...    29   1.2  
M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical ...    29   1.2  
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ...    27   4.7  
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport...    27   4.7  
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    26   8.2  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    26   8.2  
AL117200-3|CAB55048.1|  257|Caenorhabditis elegans Hypothetical ...    26   8.2  
AF000197-5|AAB52900.3|  579|Caenorhabditis elegans Hypothetical ...    26   8.2  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  173 bits (421), Expect = 4e-44
 Identities = 78/112 (69%), Positives = 92/112 (82%)
 Frame = +2

Query: 50  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 229
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 230 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRVIYDVKGRFTIHRI 385
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRI 113


>Z93396-1|CAB07709.1|  875|Caenorhabditis elegans Hypothetical
           protein ZC15.1 protein.
          Length = 875

 Score = 30.7 bits (66), Expect = 0.38
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 5   GTRVSFLFKVLFNMARGPKKHLKRLNAPKAWMLDKLGGV 121
           GTRV  + K+ F + + P   LK   A   WM  +L G+
Sbjct: 684 GTRVHDIIKLEFTITKNPPAALKAYQARNTWMQQQLTGL 722


>AC006638-6|AAK85484.2|  160|Caenorhabditis elegans Hypothetical
           protein F41G4.4 protein.
          Length = 160

 Score = 30.7 bits (66), Expect = 0.38
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 5   GTRVSFLFKVLFNMARGPKKHLKRLNAPKAWMLDKLGGV 121
           GTRV  + K+ F + + P   LK   A   WM  +L G+
Sbjct: 11  GTRVHDIIKLEFTITKNPPAALKAYQARNTWMQQQLTGL 49


>M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical
           protein ZK370.3b protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -2

Query: 268 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 176
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical
           protein ZK370.3a protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -2

Query: 268 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 176
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical
           protein Y71A12B.6 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 357 TSYITRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMR 247
           T+     N F FS  T S+NP GY+  V     TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272


>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
           related protein 2 protein.
          Length = 1272

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 322 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 227
           L   NVH  R   G+    PV FD T+  N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496


>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
           PGP-2 protein.
          Length = 1272

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 322 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 227
           L   NVH  R   G+    PV FD T+  N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496


>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 384 IRWIVNLPFTSYITRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 241
           +R +V+  F   I  +   +FS + T +NP+G   S R  P TL R C
Sbjct: 170 VRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214


>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 384 IRWIVNLPFTSYITRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 241
           +R +V+  F   I  +   +FS + T +NP+G   S R  P TL R C
Sbjct: 170 VRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 379  VDSEPAFHIIYYTE*LICFLNGYNVH 302
            V+  PAFH     E +I  +NG+ VH
Sbjct: 1207 VEGSPAFHANLQAEDMITHVNGHPVH 1232


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 379  VDSEPAFHIIYYTE*LICFLNGYNVH 302
            V+  PAFH     E +I  +NG+ VH
Sbjct: 1207 VEGSPAFHANLQAEDMITHVNGHPVH 1232


>AL117200-3|CAB55048.1|  257|Caenorhabditis elegans Hypothetical
           protein Y50E8A.5 protein.
          Length = 257

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 191 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNE 334
           N +KY L  N+   IV      V+ K++ D    AG+   ++I +T++
Sbjct: 98  NWVKYGLPVNQGDSIVSDDKCLVENKLKKDGDSCAGYCMTINITRTDD 145


>AF000197-5|AAB52900.3|  579|Caenorhabditis elegans Hypothetical
           protein T21G5.1 protein.
          Length = 579

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 329 LFSQWIQRP*IPPGTWGQSALSRPL 255
           LF+Q IQ   +PPGT  QS+   P+
Sbjct: 521 LFAQTIQATSLPPGTIAQSSTPIPI 545


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,213,497
Number of Sequences: 27780
Number of extensions: 178560
Number of successful extensions: 517
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)