Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D23
(373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1066 + 30098780-30098866,30099139-30099225,30099318-300994... 145 1e-35
11_04_0205 + 14860857-14861534,14862585-14862975,14863069-148631... 121 2e-28
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390... 119 6e-28
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594... 112 7e-26
05_04_0394 - 20906923-20907146,20907251-20907340,20908380-209087... 112 1e-25
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 44 4e-05
04_04_0520 - 25871932-25872074,25872234-25872294,25873267-258733... 30 0.50
09_03_0051 + 11902322-11903125 30 0.67
11_03_0181 - 11301759-11301838,11302294-11303095 29 1.5
03_01_0463 + 3551764-3551897,3551989-3552046,3552148-3552255,355... 29 1.5
03_06_0350 - 33306753-33307060,33307133-33307193,33307283-333074... 28 2.0
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 28 2.7
10_07_0186 - 13912973-13913015,13913467-13913773,13913983-139140... 27 3.6
12_01_0420 + 3320182-3320454,3320795-3321109 27 4.7
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243... 27 6.2
05_07_0050 + 27332855-27333009,27333725-27333790,27333971-273340... 26 8.2
>03_05_1066 +
30098780-30098866,30099139-30099225,30099318-30099439,
30099580-30099656,30100135-30100259,30100497-30100589,
30100840-30100932,30101016-30101213,30101337-30101441,
30101535-30101600,30101808-30101885,30102144-30102233,
30102325-30102448,30102590-30102741
Length = 498
Score = 145 bits (351), Expect = 1e-35
Identities = 64/98 (65%), Positives = 79/98 (80%)
Frame = +1
Query: 1 ARGRCLDYKRFRQIADENGAYLMADMAHVSGLVAAGVIPSPFEHCDIVTTTTHKTLRGPR 180
A R DY R R++ D+ A L+ADMAH+SGLVAAGV+PSPF++ D+VTTTTHK+LRGPR
Sbjct: 216 AYARLYDYDRMRKVCDKQKAILLADMAHISGLVAAGVVPSPFDYADVVTTTTHKSLRGPR 275
Query: 181 AGVIFFRKGVRSVKANGQKVMYDFEGKINQAVFPGLQG 294
+IF+RKGV+ V G++VMYDFE KIN AVFPGLQG
Sbjct: 276 GAMIFYRKGVKGVNKQGKEVMYDFEDKINAAVFPGLQG 313
Score = 38.7 bits (86), Expect = 0.001
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +2
Query: 284 GFRDGPHNHXXXXXXXXMKQATSPEYIEYQ 373
G + GPHNH +KQAT+PEY YQ
Sbjct: 310 GLQGGPHNHTITGLAVALKQATTPEYRAYQ 339
>11_04_0205 +
14860857-14861534,14862585-14862975,14863069-14863170,
14863438-14863682
Length = 471
Score = 121 bits (292), Expect = 2e-28
Identities = 56/93 (60%), Positives = 71/93 (76%), Gaps = 1/93 (1%)
Frame = +1
Query: 19 DYKRFRQIADENGAYLMADMAHVSGLVAAGVIPSPFEHCDIVTTTTHKTLRGPRAGVIFF 198
DY + R +AD+ GA L+ DMAH+SGLVAA +PFE+CD+VTTTTHK+LRGPRAG+IF+
Sbjct: 197 DYAKLRAVADKVGALLLCDMAHISGLVAAQEAANPFEYCDVVTTTTHKSLRGPRAGMIFY 256
Query: 199 RKGVR-SVKANGQKVMYDFEGKINQAVFPGLQG 294
RKG + K + +YD+E KIN AVFP LQG
Sbjct: 257 RKGPKPPKKGQPEGAVYDYEDKINFAVFPSLQG 289
>12_02_0028 -
12437332-12437576,12438436-12438537,12438619-12439009,
12439996-12440532
Length = 424
Score = 119 bits (287), Expect = 6e-28
Identities = 55/93 (59%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
Frame = +1
Query: 19 DYKRFRQIADENGAYLMADMAHVSGLVAAGVIPSPFEHCDIVTTTTHKTLRGPRAGVIFF 198
DY RFR IAD+ GA L+ DMAH+SGLVAA +PF++ D+VTTTTHK+LRGPR+G+IF+
Sbjct: 150 DYARFRAIADKCGAMLLCDMAHISGLVAAQEAANPFQYSDVVTTTTHKSLRGPRSGMIFY 209
Query: 199 RKGVR-SVKANGQKVMYDFEGKINQAVFPGLQG 294
RKG++ K + +YD+E +IN AVFP LQG
Sbjct: 210 RKGLKPPKKGQPEGALYDYEDRINFAVFPSLQG 242
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 296 GPHNHXXXXXXXXMKQATSPEYIEY 370
GPHNH +KQ SP + Y
Sbjct: 243 GPHNHQIAALAVGLKQTMSPGFKSY 267
>01_06_1521 +
37956131-37957204,37958560-37958962,37959370-37959471,
37959569-37959792
Length = 600
Score = 112 bits (270), Expect = 7e-26
Identities = 55/97 (56%), Positives = 68/97 (70%), Gaps = 5/97 (5%)
Frame = +1
Query: 19 DYKRFRQIADENGAYLMADMAHVSGLVAAGVIPSPFEHCDIVTTTTHKTLRGPRAGVIFF 198
D+ R R IAD+ GA LM DMAH+SGLVAA SPF++CD+VT+TTHK LRGPR G+IFF
Sbjct: 329 DFARMRLIADKCGAVLMCDMAHISGLVAAKECRSPFDYCDVVTSTTHKNLRGPRGGIIFF 388
Query: 199 RKGVRSVKANG-----QKVMYDFEGKINQAVFPGLQG 294
R+G + G + YDFE +IN AVFP +QG
Sbjct: 389 RRGKNLRRRTGSFSQADENDYDFEDRINFAVFPSMQG 425
Score = 27.9 bits (59), Expect = 2.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 296 GPHNHXXXXXXXXMKQATSPEYIEY 370
GPHN+ +KQ +PEY Y
Sbjct: 426 GPHNNHIAALAITLKQVATPEYKAY 450
>05_04_0394 -
20906923-20907146,20907251-20907340,20908380-20908785,
20909264-20910247
Length = 567
Score = 112 bits (269), Expect = 1e-25
Identities = 56/98 (57%), Positives = 68/98 (69%), Gaps = 6/98 (6%)
Frame = +1
Query: 19 DYKRFRQIADENGAYLMADMAHVSGLVAAGVIPSPFEHCDIVTTTTHKTLRGPRAGVIFF 198
DY R R +AD+ GA LM DMA +SGLVAA +PF++CDIVT+TTHK+LRGPR G+IFF
Sbjct: 299 DYARMRLVADKCGAVLMCDMAQISGLVAAKECRNPFDYCDIVTSTTHKSLRGPRGGIIFF 358
Query: 199 RKGVRSVKANG------QKVMYDFEGKINQAVFPGLQG 294
RKG K G + YDFE +IN AVFP +QG
Sbjct: 359 RKGKNLRKRVGSLTQVVENDQYDFEDRINFAVFPSMQG 396
>12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 44.0 bits (99), Expect = 4e-05
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1
Query: 118 SPFEHCDIVTTTTHKTLRGPRAGVIFFRKG 207
S F HCD+VT+T +K L GPR G IFFR+G
Sbjct: 1677 SLFNHCDVVTST-NKNLTGPRGGTIFFRRG 1705
>04_04_0520 -
25871932-25872074,25872234-25872294,25873267-25873389,
25873465-25873531,25873710-25873780,25873853-25874004,
25874082-25874158,25874323-25874435,25874503-25874598,
25874703-25874734,25874838-25874884,25875015-25875068,
25875212-25875289,25875607-25875698
Length = 401
Score = 30.3 bits (65), Expect = 0.50
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 210 NSLAEEYDPSARTPQCFVCSCCYDVTMFKRTWNYTCCNKA*HVCHVC 70
+ EE A+T C+ C D+T+FK+ Y N C VC
Sbjct: 119 DKFGEEMKKDAQTAGLHHCTYCLDLTIFKQAHYYEDDNAPTGTCAVC 165
>09_03_0051 + 11902322-11903125
Length = 267
Score = 29.9 bits (64), Expect = 0.67
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -3
Query: 260 FPSKSYITFCPFALTERTPLRKNMTPARGPRSVLCVVVVT-MSQCSKGLGITPAATRPDT 84
FPS S+ F P A RTP + +P P + T + S TP A RP+T
Sbjct: 74 FPSASFYAFHPDAAEPRTPTPRKRSPVAAPPAASEPQTPTPPPRPSVAAPDTPPAQRPET 133
>11_03_0181 - 11301759-11301838,11302294-11303095
Length = 293
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 115 PSPFEHCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKANGQKVM 243
PSPFEH VT GP + F++G+R A+G V+
Sbjct: 157 PSPFEHVHGVTPLESTARLGPEDAAL-FQEGLRVYDASGFAVV 198
>03_01_0463 +
3551764-3551897,3551989-3552046,3552148-3552255,
3552664-3552721,3552788-3553014,3553085-3553145,
3553311-3553615
Length = 316
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 268 QAVFPGLQGRSSQPRHSRDSDCYEAG 345
+ VFP + R SQP+ SDC E G
Sbjct: 188 ETVFPDAEARLSQPKDETWSDCAEQG 213
>03_06_0350 -
33306753-33307060,33307133-33307193,33307283-33307458,
33307551-33307608,33307730-33307834,33307924-33307981,
33308072-33308238
Length = 310
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 259 KINQAVFPGLQGRSSQPRHSRDSDCYEAG 345
K + VFP +G SQP+ SDC + G
Sbjct: 178 KGGETVFPNAEGWESQPKDDSFSDCAKKG 206
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 27.9 bits (59), Expect = 2.7
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 185 GSYSSAREFARSKRTGRK*CTI--SKGRSTRPYSRGFRDGPHNH 310
G +S R+F S R GR+ S+GR R RGF G H
Sbjct: 659 GGFSGGRDFNSSGRGGRRGGRGDGSRGRGDRGRGRGFGRGDRGH 702
>10_07_0186 -
13912973-13913015,13913467-13913773,13913983-13914043,
13914124-13914299,13914393-13914450,13914709-13914776,
13915591-13915666,13916523-13916627,13916711-13916768,
13916874-13917031
Length = 369
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 256 GKINQAVFPGLQGRSSQPRHSRDSDCYEAG 345
GK + +FP +G+ QP+ SDC + G
Sbjct: 222 GKGGETIFPEAEGKLLQPKDDTWSDCAKNG 251
>12_01_0420 + 3320182-3320454,3320795-3321109
Length = 195
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 320 RLWRGCEDRP*SPGNT 273
R+W C DRP SPG+T
Sbjct: 66 RMWVLCSDRPFSPGST 81
>09_01_0165 -
2436769-2437442,2438159-2438224,2438318-2438415,
2439856-2440214
Length = 398
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 280 PGLQGRSSQPRHSRDSDCYEAG 345
PG QG+ P + + SD Y AG
Sbjct: 363 PGYQGQGGNPSYQQGSDNYNAG 384
>05_07_0050 +
27332855-27333009,27333725-27333790,27333971-27334030,
27334425-27334515,27334893-27335073,27336037-27336128,
27336672-27336995
Length = 322
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 103 LQQGLTRVPCLPSSRRHFHQLFV 35
LQ L++ PC P+S HF Q ++
Sbjct: 297 LQNRLSQFPCTPNSIAHFLQFYL 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,611,212
Number of Sequences: 37544
Number of extensions: 214958
Number of successful extensions: 596
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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