Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D23
         (373 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-13|AAB53830.1|  484|Caenorhabditis elegans Maternal effec...   149   5e-37
U00048-12|AAL27228.1|  507|Caenorhabditis elegans Maternal effec...   149   5e-37
Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AL132858-11|CAH04763.1|  133|Caenorhabditis elegans Hypothetical...    27   3.2  
AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical ...    27   3.2  
AF288812-1|AAG10199.1|  566|Caenorhabditis elegans synembryn pro...    27   3.2  
AC084158-34|AAK68564.1|  566|Caenorhabditis elegans Resistance t...    27   3.2  
U43375-4|AAA83621.1|  205|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z73424-5|CAA97782.3|  506|Caenorhabditis elegans Hypothetical pr...    26   7.5  
Z81510-5|CAB04165.1|  188|Caenorhabditis elegans Hypothetical pr...    26   9.9  
AC006683-1|AAK71395.4|  954|Caenorhabditis elegans Adenylyl cycl...    26   9.9  

>U00048-13|AAB53830.1|  484|Caenorhabditis elegans Maternal effect
           lethal protein32, isoform a protein.
          Length = 484

 Score =  149 bits (362), Expect = 5e-37
 Identities = 68/95 (71%), Positives = 80/95 (84%)
 Frame = +1

Query: 10  RCLDYKRFRQIADENGAYLMADMAHVSGLVAAGVIPSPFEHCDIVTTTTHKTLRGPRAGV 189
           R LDY+RFR+IA + GAYLM+DMAH+SGLVAAG+IPSPFE+ D+VTTTTHK+LRGPR  +
Sbjct: 210 RHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGAL 269

Query: 190 IFFRKGVRSVKANGQKVMYDFEGKINQAVFPGLQG 294
           IF+RKGVRS  A G   +YD E KIN AVFPGLQG
Sbjct: 270 IFYRKGVRSTNAKGVDTLYDLEEKINSAVFPGLQG 304



 Score = 30.3 bits (65), Expect = 0.46
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 284 GFRDGPHNHXXXXXXXXMKQATSPEYIEY 370
           G + GPHNH        ++Q  S ++++Y
Sbjct: 301 GLQGGPHNHTIAGIAVALRQCLSEDFVQY 329


>U00048-12|AAL27228.1|  507|Caenorhabditis elegans Maternal effect
           lethal protein32, isoform b protein.
          Length = 507

 Score =  149 bits (362), Expect = 5e-37
 Identities = 68/95 (71%), Positives = 80/95 (84%)
 Frame = +1

Query: 10  RCLDYKRFRQIADENGAYLMADMAHVSGLVAAGVIPSPFEHCDIVTTTTHKTLRGPRAGV 189
           R LDY+RFR+IA + GAYLM+DMAH+SGLVAAG+IPSPFE+ D+VTTTTHK+LRGPR  +
Sbjct: 233 RHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGAL 292

Query: 190 IFFRKGVRSVKANGQKVMYDFEGKINQAVFPGLQG 294
           IF+RKGVRS  A G   +YD E KIN AVFPGLQG
Sbjct: 293 IFYRKGVRSTNAKGVDTLYDLEEKINSAVFPGLQG 327



 Score = 30.3 bits (65), Expect = 0.46
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 284 GFRDGPHNHXXXXXXXXMKQATSPEYIEY 370
           G + GPHNH        ++Q  S ++++Y
Sbjct: 324 GLQGGPHNHTIAGIAVALRQCLSEDFVQY 352


>Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -2

Query: 294 SLKPREYGLVDLPFEIVHH----FLPVRFDRANSLAEEYDP 184
           SL+PR  GL+ LPF +  H    +LP  +   N L  +  P
Sbjct: 33  SLRPRGIGLIRLPFGVSDHRSGPYLPNLYIAGNKLYHKTQP 73


>AL132858-11|CAH04763.1|  133|Caenorhabditis elegans Hypothetical
           protein Y113G7A.12 protein.
          Length = 133

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +1

Query: 151 TTHK-TLRGP-RAGVIFFRKGVR-SVKANGQKVMYDFEGKINQAVFPGLQGRSSQPRHSR 321
           T HK TLR   +      R+ VR S  ++ + VM+D +  + Q+        SS+     
Sbjct: 51  TKHKMTLRSAAKVSQARQRRNVRASSSSSRESVMHDLQSSVQQSRNVRASSSSSRESVMH 110

Query: 322 DSDCYEA 342
           D  CYEA
Sbjct: 111 DRGCYEA 117


>AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -2

Query: 294 SLKPREYGLVDLPFEIVHH----FLPVRFDRANSLAEEYDP 184
           SL+PR  GL+ LPF +  H    +LP  +   N L  +  P
Sbjct: 33  SLRPRGIGLIRLPFGVSDHRSGPYLPNLYIAGNKLYHKTQP 73


>AF288812-1|AAG10199.1|  566|Caenorhabditis elegans synembryn
           protein.
          Length = 566

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 283 GLQGRSSQPRHSRDSDCYEAGDFARI 360
           GL G+ +QP+H+ DS+  E  D+ +I
Sbjct: 455 GLLGQINQPKHASDSEDSETEDYNQI 480


>AC084158-34|AAK68564.1|  566|Caenorhabditis elegans Resistance to
           inhibitors of cholinesteraseprotein 8, isoform a
           protein.
          Length = 566

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 283 GLQGRSSQPRHSRDSDCYEAGDFARI 360
           GL G+ +QP+H+ DS+  E  D+ +I
Sbjct: 455 GLLGQINQPKHASDSEDSETEDYNQI 480


>U43375-4|AAA83621.1|  205|Caenorhabditis elegans Hypothetical
           protein K09C4.6 protein.
          Length = 205

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -2

Query: 285 PREYGLVDLPFEIVHHFLPVRFDRANSLAEEYD 187
           PR+ GL+ +P EI+ + LP +   A S+AE+ D
Sbjct: 171 PRDSGLIPIPSEILGNSLPSQ--TALSMAEKID 201


>Z73424-5|CAA97782.3|  506|Caenorhabditis elegans Hypothetical
           protein C44B9.5 protein.
          Length = 506

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = -3

Query: 257 PSKSYITFCPFALTERTPLRKNMTPARG-----PRSVLCVVVVTMSQCSKGLGITPAATR 93
           P KS  +F    +   TP  KN+TP R       RS+   VV+      K LG+  A  +
Sbjct: 270 PDKS--SFLAETMPLATPSPKNLTPKRALPTSSARSIFGHVVLPNPMKRKDLGVLAAVEK 327

Query: 92  PD 87
           P+
Sbjct: 328 PE 329


>Z81510-5|CAB04165.1|  188|Caenorhabditis elegans Hypothetical
           protein F21D9.8 protein.
          Length = 188

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -2

Query: 159 VCSCCYDVTMFKRTWNYTCCNKA*HVCHVC-HQVGAIFISYLSESL 25
           +C  C  V +    W++  C KA   C VC +    +   Y  E+L
Sbjct: 122 MCKHCLTVGVTDDDWHHEGCPKAKDTCSVCANNTNRVGCKYHHEAL 167


>AC006683-1|AAK71395.4|  954|Caenorhabditis elegans Adenylyl cyclase
            protein 4 protein.
          Length = 954

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 91   GLVAAGVIPSPFEHCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKANGQKVMYDFE--GKI 264
            G V AGVI S   H DI   + +   R    GV    +    VK+  + + Y+FE  G+I
Sbjct: 870  GPVVAGVIGSDKPHYDIWGNSVNVASRMDSGGVAGRIQVTEEVKSILEPLGYNFECRGQI 929

Query: 265  N 267
            N
Sbjct: 930  N 930


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,788,046
Number of Sequences: 27780
Number of extensions: 180088
Number of successful extensions: 477
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)