Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D21
(324 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 30 0.100
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 0.53
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 26 1.6
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 2.8
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 25 2.8
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 25 3.7
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 25 3.7
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c... 24 4.9
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 24 4.9
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi... 24 6.5
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 24 6.5
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 23 8.6
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc... 23 8.6
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 23 8.6
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 23 8.6
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 29.9 bits (64), Expect = 0.100
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 1 HEAEVVYKSLEDAQRAAELYHNRELDGQPMNCLVVP 108
H A + ++SL+ A AE HN L G+ + C V+P
Sbjct: 147 HYAFIEFESLDVANVVAETMHNYLLYGKLLQCKVIP 182
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 27.5 bits (58), Expect = 0.53
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 13 VVYKSLEDAQRAAELYHNRELDGQ 84
V + LEDAQRAA+ N++L G+
Sbjct: 51 VTFSMLEDAQRAAKELKNKKLHGR 74
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 1.6
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 1 HEAEVVYKSLEDAQ-RAAELYHNRELDGQP 87
HEAE+ K L DA+ R EL +N L P
Sbjct: 281 HEAEISIKKLNDAENRIKELENNPTLSFNP 310
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 2.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQ 84
AE + ++ E+A RAAE NREL Q
Sbjct: 787 AEAIREAEEEAARAAEEEANRELHEQ 812
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 2.8
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 113 YQEF-YQDDDTLVITSLAFTSPQLHGRLQCDMRLME--EKFEAKENHSI 250
Y+E+ Y + + +S A TSP+L + CD ++ E KEN I
Sbjct: 18 YEEYKYHEIKEMSFSSCARTSPELLKKFGCDAHVITSVEGAPKKENKKI 66
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 24.6 bits (51), Expect = 3.7
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = +1
Query: 16 VYKSLEDAQRAAELYHNRELDGQPMNCLVVPFLPRILPRRRY 141
+++ L DA++A + N ++DG+ ++ + P+ LP +
Sbjct: 179 IFQDLSDAEQAVQYLSNCKIDGRLISATITNH-PKRLPNAEH 219
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 24.6 bits (51), Expect = 3.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 267 SCVNPALYSTHSNVEP 314
SC +PA++S H N+ P
Sbjct: 499 SCNSPAIHSLHGNLSP 514
>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 24.2 bits (50), Expect = 4.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 163 SQRCNDQSIVVLVEFLVKTGLP 98
SQRCN S +V + + GLP
Sbjct: 103 SQRCNHDSKLVYMSLVQNNGLP 124
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 24.2 bits (50), Expect = 4.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 249 IEWFSFASNFSSINRMSHCSR 187
IE+F ASN S +N+++H R
Sbjct: 87 IEFFGPASNISFVNQLNHYLR 107
>SPBC146.11c |mug97|meu33|meiotically upregulated gene
Mug97|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 23.8 bits (49), Expect = 6.5
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -1
Query: 255 YVIEWFSFASNFSSINRMSHCSRPWSWGEVKARDVMTR 142
YV++ SF + R H PW+ +V R+++ R
Sbjct: 210 YVLQGISFGPECEYVLRRKHWWNPWA-EKVMRREIVER 246
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 23.8 bits (49), Expect = 6.5
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -1
Query: 261 SIYVIEWFS--FASNFSSINRMSHCSRPW 181
SI+++ F+ F S FSS+ +S C + W
Sbjct: 145 SIFILRLFNDGFNSLFSSLFILSSCKKKW 173
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 23.4 bits (48), Expect = 8.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 113 YQEFYQDDDTLVITSLAFTSPQL 181
Y EFY+DD + ++ +TS L
Sbjct: 712 YDEFYKDDYATSLPNVVYTSEVL 734
>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 23.4 bits (48), Expect = 8.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 219 SSINRMSHCSRPWSWGEVKARDVMTRVSSSW*NSW*KRDY 100
S+ N+ + R VK+ + R + W SW K DY
Sbjct: 102 STENKKKYAERHGYHFFVKSTGLKRRYAHEWRESWEKADY 141
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 23.4 bits (48), Expect = 8.6
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -1
Query: 246 EWF-SFASNFSSINRMSHCSRPWSWG 172
E+F SFA++F+S++ +S +SWG
Sbjct: 78 EFFESFAASFASLDVVSGVRLTFSWG 103
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 23.4 bits (48), Expect = 8.6
Identities = 8/35 (22%), Positives = 19/35 (54%)
Frame = +1
Query: 13 VVYKSLEDAQRAAELYHNRELDGQPMNCLVVPFLP 117
+++ S+ + + LY+ + D +P + + FLP
Sbjct: 165 LIFASVSERKYKISLYNIKSFDARPFQDIPLTFLP 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,400,583
Number of Sequences: 5004
Number of extensions: 27922
Number of successful extensions: 75
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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