Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D21
(324 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0001 + 1777-1935,2002-2109,2492-2560,2652-2836,3040-3055 32 0.12
11_01_0002 + 3386-3541,3619-3717,4114-4182,4275-4459,4662-4677 32 0.12
03_02_0553 - 9420960-9421164,9421634-9421812,9421902-9421970,942... 31 0.27
05_05_0157 + 22816261-22817488,22818081-22818172 30 0.36
06_01_1037 - 8140602-8140782,8141489-8141545,8141649-8141845,814... 29 0.63
03_05_0275 + 22628452-22628694,22630181-22630386,22631368-226316... 27 2.6
08_02_0737 - 20572068-20572290,20572785-20572841,20573482-205736... 27 3.4
09_06_0308 - 22199389-22199451,22199604-22199924,22200178-222004... 27 4.5
04_03_0684 - 18670697-18670933,18671003-18671102,18671214-186712... 27 4.5
03_02_0865 - 11895257-11895340,11896004-11896069,11896297-118963... 27 4.5
09_02_0407 - 8635717-8636122,8636342-8636729,8637040-8637379 26 5.9
07_01_0413 - 3155080-3155274,3155628-3155933,3156062-3156163,315... 26 5.9
03_01_0250 - 1937650-1939071,1939375-1939468,1939665-1939870,193... 26 5.9
02_02_0205 + 7769137-7770153 26 5.9
01_05_0345 + 21181114-21181222,21181306-21181367,21181505-211815... 26 5.9
11_06_0743 + 26847652-26849424 26 7.8
08_02_1603 - 28156141-28157025,28157547-28157999 26 7.8
>12_01_0001 + 1777-1935,2002-2109,2492-2560,2652-2836,3040-3055
Length = 178
Score = 31.9 bits (69), Expect = 0.12
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPM 90
AEVV+ DA A + Y+N +LDG+PM
Sbjct: 115 AEVVFSRKSDALAAVKRYNNVQLDGKPM 142
>11_01_0002 + 3386-3541,3619-3717,4114-4182,4275-4459,4662-4677
Length = 174
Score = 31.9 bits (69), Expect = 0.12
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPM 90
AEVV+ DA A + Y+N +LDG+PM
Sbjct: 111 AEVVFSRKSDALAAVKRYNNVQLDGKPM 138
>03_02_0553 -
9420960-9421164,9421634-9421812,9421902-9421970,
9422452-9422607,9422756-9422968
Length = 273
Score = 30.7 bits (66), Expect = 0.27
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPM 90
AEVV+ DA A + Y+N +LDG+PM
Sbjct: 149 AEVVFARRGDAVAAVKKYNNVQLDGKPM 176
>05_05_0157 + 22816261-22817488,22818081-22818172
Length = 439
Score = 30.3 bits (65), Expect = 0.36
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPMNCLVVPFLPRILPRRRYSGHYISGFHFT 174
A +V+ + D + ++ R +D + C P LP +LP S G H++
Sbjct: 359 ANIVHLIVGDQMLSIDMIKERAIDSSRLGCADFPLLPCVLPPWLESSQIPEGIHWS 414
>06_01_1037 -
8140602-8140782,8141489-8141545,8141649-8141845,
8143174-8143242,8143347-8143490,8144055-8144225
Length = 272
Score = 29.5 bits (63), Expect = 0.63
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPMNCLVV 105
AEV++ +A A + Y+N LDG+PM V+
Sbjct: 131 AEVIFTRRSEAVAALKRYNNVRLDGKPMKIEVI 163
>03_05_0275 +
22628452-22628694,22630181-22630386,22631368-22631659,
22632707-22632814,22632972-22633222,22633316-22633357,
22634478-22634601,22634786-22634851,22635734-22635910
Length = 502
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 49 AELYHNRELDGQPMNCLVVPFLPRILPRRRYSGHYISGFHF 171
AEL N L QP+ + +L R+L GHYI G +
Sbjct: 340 AELVENASLPFQPLISVPRDYLARLLFWCMLLGHYIRGLEY 380
>08_02_0737 -
20572068-20572290,20572785-20572841,20573482-20573672,
20574566-20574700,20575722-20575871
Length = 251
Score = 27.1 bits (57), Expect = 3.4
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPMNCLVV------PFLPRI 123
AEVV+ DA A + Y+N LDG+ M V+ P PRI
Sbjct: 98 AEVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLGLPMTPRI 142
>09_06_0308 -
22199389-22199451,22199604-22199924,22200178-22200423,
22202152-22203337,22203487-22203551,22204205-22204486,
22205005-22205106,22205587-22206105
Length = 927
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +1
Query: 13 VVYKSLEDAQRAAELYHNRELDGQ 84
V ++E+A++A E++H ++DG+
Sbjct: 189 VTMSTVEEAEKAVEMFHRYDVDGR 212
>04_03_0684 -
18670697-18670933,18671003-18671102,18671214-18671266,
18671664-18671810,18671901-18672031,18673064-18673088,
18673201-18673305,18673941-18674054,18674900-18674992,
18675101-18675193,18675951-18676057,18676442-18676490,
18677140-18677253,18677728-18677787,18677887-18677955,
18679154-18679255,18679338-18679366,18679450-18679732,
18680399-18680752
Length = 754
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 193 QPPVELG*SESQRCNDQSIVVLVEFLVKT 107
+PP+ L SE+Q D + V +V+ L+K+
Sbjct: 576 EPPITLKPSENQPAQDATEVAIVKLLIKS 604
>03_02_0865 -
11895257-11895340,11896004-11896069,11896297-11896355,
11896470-11896557,11897158-11897328,11897406-11897564,
11897653-11897835,11897931-11898012,11898753-11898959,
11899099-11899170,11901948-11902055,11902460-11902506
Length = 441
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 4 EAEVVYKSLEDAQRAAELYHNRELDGQPM 90
+A V + S+E AQRA L H G+PM
Sbjct: 399 QAFVTFPSVELAQRALNLVHGFVFKGKPM 427
>09_02_0407 - 8635717-8636122,8636342-8636729,8637040-8637379
Length = 377
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 139 YSGHYISGFHFTPTPRAAAMRHA 207
+SGHYI G+ FT A + H+
Sbjct: 140 HSGHYILGWSFTTDGEAQPLNHS 162
>07_01_0413 -
3155080-3155274,3155628-3155933,3156062-3156163,
3156262-3156705
Length = 348
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 13 VVYKSLEDAQRAAELYHNRELDGQPM 90
V +++ EDAQ A E EL+G+P+
Sbjct: 266 VSFRTAEDAQAALEALDGVELEGRPL 291
>03_01_0250 -
1937650-1939071,1939375-1939468,1939665-1939870,
1939986-1940132
Length = 622
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -3
Query: 190 PPVELG*SESQRCNDQSIVVLVEFLVKTGLPSNS*AVHPTPDCDTVPQLFVR 35
P +EL E+ + D +++ L LV G +S + DC + L +R
Sbjct: 487 PIIELRMRENPKIGDAAVMALASMLVDGGTHGSSLQLLDLYDCGAITPLAIR 538
>02_02_0205 + 7769137-7770153
Length = 338
Score = 26.2 bits (55), Expect = 5.9
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 31 EDAQRAAELYHNRELDG--QPMNCLVVPFLPRILPRRRYSGHYISGFHFTPTPRAAAMRH 204
+DA+ A++ N L G + L+ F + L R + +SG H R A R
Sbjct: 160 KDARTASQAAANGNLPGPVSSLTSLLATFAAKGLSARDMTA--LSGAHTVGRARCATFRG 217
Query: 205 AINGG 219
+NGG
Sbjct: 218 RVNGG 222
>01_05_0345 +
21181114-21181222,21181306-21181367,21181505-21181588,
21182069-21182123,21182843-21182969,21183129-21183179,
21183275-21183374
Length = 195
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 291 YIMPDLHSFLSIYVIEWFSFASNFSSINRMSHCSRPWSW 175
Y M DL S + + V +W + + SI + H + W W
Sbjct: 90 YFMEDLSSPM-VVVADWIAALACLFSIKGLLHSWKKWMW 127
>11_06_0743 + 26847652-26849424
Length = 590
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 249 IEWFSFASNFSSINRMSHCSRPWSW 175
I+ + AS +SSI+R R WSW
Sbjct: 74 IDHYEHASAWSSIHRSKITRRRWSW 98
>08_02_1603 - 28156141-28157025,28157547-28157999
Length = 445
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 1 HEAEVVYKSLEDAQRAAELYHNRELDGQPMNCLVVPFLPR 120
H+A + + LE+ + A +L+H D P NC+ V PR
Sbjct: 343 HDAAAITRRLEEYEAAPKLFHYS--DAGP-NCVAVGSSPR 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,300,573
Number of Sequences: 37544
Number of extensions: 202272
Number of successful extensions: 434
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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