Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D21
(324 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93241-3|CAI19835.1| 421|Homo sapiens protein ( Human DNA seque... 37 0.012
DQ887818-1|ABI74675.1| 163|Homo sapiens POLDIP3 protein. 37 0.012
CR456456-1|CAG30342.1| 421|Homo sapiens dJ222E13.3 protein. 37 0.012
BC095411-1|AAH95411.1| 421|Homo sapiens polymerase (DNA-directe... 37 0.012
BC056912-1|AAH56912.2| 392|Homo sapiens polymerase (DNA-directe... 37 0.012
BC049840-1|AAH49840.1| 421|Homo sapiens polymerase (DNA-directe... 37 0.012
BC001488-1|AAH01488.2| 417|Homo sapiens POLDIP3 protein protein. 37 0.012
AY422990-1|AAQ94604.1| 421|Homo sapiens RNA-binding protein P46... 37 0.012
AL160112-1|CAB77059.1| 392|Homo sapiens hypothetical protein pr... 37 0.012
AL160111-1|CAB77058.1| 421|Homo sapiens hypothetical protein pr... 37 0.012
AB055760-1|BAB33368.2| 424|Homo sapiens KIAA1649 protein protein. 37 0.012
BC052302-1|AAH52302.1| 257|Homo sapiens THO complex 4 protein. 28 5.6
BC065196-1|AAH65196.1| 761|Homo sapiens deleted in bladder canc... 27 9.8
BC021560-1|AAH21560.1| 320|Homo sapiens DBC1 protein protein. 27 9.8
AL353773-2|CAI16001.1| 320|Homo sapiens deleted in bladder canc... 27 9.8
AL353773-1|CAI16000.1| 761|Homo sapiens deleted in bladder canc... 27 9.8
AL138894-2|CAH72028.1| 320|Homo sapiens deleted in bladder canc... 27 9.8
AL138894-1|CAH72027.1| 761|Homo sapiens deleted in bladder canc... 27 9.8
AJ276704-1|CAC14786.1| 455|Homo sapiens DEAD box protein protein. 27 9.8
AF047002-1|AAD09608.1| 233|Homo sapiens transcriptional coactiv... 27 9.8
AF027734-1|AAC39691.1| 761|Homo sapiens IB3089A protein. 27 9.8
>Z93241-3|CAI19835.1| 421|Homo sapiens protein ( Human DNA sequence
from clone RP1-222E13 on chromosome 22. ).
Length = 421
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPMNC 96
AEVV+ +DA A + Y+NR LDGQPM C
Sbjct: 317 AEVVFVKKDDAITAYKKYNNRCLDGQPMKC 346
>DQ887818-1|ABI74675.1| 163|Homo sapiens POLDIP3 protein.
Length = 163
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPMNC 96
AEVV+ +DA A + Y+NR LDGQPM C
Sbjct: 59 AEVVFVKKDDAITAYKKYNNRCLDGQPMKC 88
>CR456456-1|CAG30342.1| 421|Homo sapiens dJ222E13.3 protein.
Length = 421
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPMNC 96
AEVV+ +DA A + Y+NR LDGQPM C
Sbjct: 317 AEVVFVKKDDAITAYKKYNNRCLDGQPMKC 346
>BC095411-1|AAH95411.1| 421|Homo sapiens polymerase (DNA-directed),
delta interacting protein 3 protein.
Length = 421
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPMNC 96
AEVV+ +DA A + Y+NR LDGQPM C
Sbjct: 317 AEVVFVKKDDAITAYKKYNNRCLDGQPMKC 346
>BC056912-1|AAH56912.2| 392|Homo sapiens polymerase (DNA-directed),
delta interacting protein 3 protein.
Length = 392
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPMNC 96
AEVV+ +DA A + Y+NR LDGQPM C
Sbjct: 288 AEVVFVKKDDAITAYKKYNNRCLDGQPMKC 317
>BC049840-1|AAH49840.1| 421|Homo sapiens polymerase (DNA-directed),
delta interacting protein 3 protein.
Length = 421
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPMNC 96
AEVV+ +DA A + Y+NR LDGQPM C
Sbjct: 317 AEVVFVKKDDAITAYKKYNNRCLDGQPMKC 346
>BC001488-1|AAH01488.2| 417|Homo sapiens POLDIP3 protein protein.
Length = 417
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPMNC 96
AEVV+ +DA A + Y+NR LDGQPM C
Sbjct: 313 AEVVFVKKDDAITAYKKYNNRCLDGQPMKC 342
>AY422990-1|AAQ94604.1| 421|Homo sapiens RNA-binding protein P46
protein.
Length = 421
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPMNC 96
AEVV+ +DA A + Y+NR LDGQPM C
Sbjct: 317 AEVVFVKKDDAITAYKKYNNRCLDGQPMKC 346
>AL160112-1|CAB77059.1| 392|Homo sapiens hypothetical protein
protein.
Length = 392
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPMNC 96
AEVV+ +DA A + Y+NR LDGQPM C
Sbjct: 288 AEVVFVKKDDAITAYKKYNNRCLDGQPMKC 317
>AL160111-1|CAB77058.1| 421|Homo sapiens hypothetical protein
protein.
Length = 421
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPMNC 96
AEVV+ +DA A + Y+NR LDGQPM C
Sbjct: 317 AEVVFVKKDDAITAYKKYNNRCLDGQPMKC 346
>AB055760-1|BAB33368.2| 424|Homo sapiens KIAA1649 protein protein.
Length = 424
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPMNC 96
AEVV+ +DA A + Y+NR LDGQPM C
Sbjct: 320 AEVVFVKKDDAITAYKKYNNRCLDGQPMKC 349
>BC052302-1|AAH52302.1| 257|Homo sapiens THO complex 4 protein.
Length = 257
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPMNCLVV 105
A+V ++ DA +A + Y+ LDG+PMN +V
Sbjct: 149 ADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 181
>BC065196-1|AAH65196.1| 761|Homo sapiens deleted in bladder cancer
1 protein.
Length = 761
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 146 PEYRRLGRILGKNGTTKQFI 87
PE++R R+LG+ TT+QFI
Sbjct: 99 PEFQRSIRLLGRRPTTQQFI 118
>BC021560-1|AAH21560.1| 320|Homo sapiens DBC1 protein protein.
Length = 320
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 146 PEYRRLGRILGKNGTTKQFI 87
PE++R R+LG+ TT+QFI
Sbjct: 99 PEFQRSIRLLGRRPTTQQFI 118
>AL353773-2|CAI16001.1| 320|Homo sapiens deleted in bladder cancer
1 protein.
Length = 320
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 146 PEYRRLGRILGKNGTTKQFI 87
PE++R R+LG+ TT+QFI
Sbjct: 99 PEFQRSIRLLGRRPTTQQFI 118
>AL353773-1|CAI16000.1| 761|Homo sapiens deleted in bladder cancer
1 protein.
Length = 761
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 146 PEYRRLGRILGKNGTTKQFI 87
PE++R R+LG+ TT+QFI
Sbjct: 99 PEFQRSIRLLGRRPTTQQFI 118
>AL138894-2|CAH72028.1| 320|Homo sapiens deleted in bladder cancer
1 protein.
Length = 320
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 146 PEYRRLGRILGKNGTTKQFI 87
PE++R R+LG+ TT+QFI
Sbjct: 99 PEFQRSIRLLGRRPTTQQFI 118
>AL138894-1|CAH72027.1| 761|Homo sapiens deleted in bladder cancer
1 protein.
Length = 761
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 146 PEYRRLGRILGKNGTTKQFI 87
PE++R R+LG+ TT+QFI
Sbjct: 99 PEFQRSIRLLGRRPTTQQFI 118
>AJ276704-1|CAC14786.1| 455|Homo sapiens DEAD box protein protein.
Length = 455
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 143 LVITSLAFTSPQLHGRLQCDMRLME-EKFEAKEN 241
L++ +L FT+ LHG++ RL KF+AKE+
Sbjct: 281 LLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKES 314
>AF047002-1|AAD09608.1| 233|Homo sapiens transcriptional
coactivator ALY protein.
Length = 233
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 7 AEVVYKSLEDAQRAAELYHNRELDGQPMNCLVV 105
A V ++ DA +A + Y+ LDG+PMN +V
Sbjct: 125 ANVHFERKADALKAMKQYNGFPLDGRPMNIQLV 157
>AF027734-1|AAC39691.1| 761|Homo sapiens IB3089A protein.
Length = 761
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 146 PEYRRLGRILGKNGTTKQFI 87
PE++R R+LG+ TT+QFI
Sbjct: 99 PEFQRSIRLLGRRPTTQQFI 118
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,591,499
Number of Sequences: 237096
Number of extensions: 980360
Number of successful extensions: 1800
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1800
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1627597384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -