Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D21
         (324 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast...    31   0.14 
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    30   0.33 
Z46828-3|CAA86858.2|  363|Caenorhabditis elegans Hypothetical pr...    29   0.77 
Z77662-4|CAB01193.1|  248|Caenorhabditis elegans Hypothetical pr...    26   5.4  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    26   5.4  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    26   5.4  
Z47357-2|CAD54175.1|  464|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z47357-1|CAA87421.2|  479|Caenorhabditis elegans Hypothetical pr...    26   7.2  
U58746-7|AAB00628.2|  461|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform a protein.
          Length = 796

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 1   HEAEVVYKSLEDAQRAAELYHNRELDGQ 84
           H A V YK ++DA RA +  HN  LDG+
Sbjct: 157 HTAYVTYKRVDDALRAIQGVHNSMLDGR 184


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +2

Query: 131 DDDTLVITSLAFTSPQLHG----RLQCDMRLMEEKFEAKENHSIT 253
           +D+T+++       PQ       R+ C   L++E+F+A E HS T
Sbjct: 700 EDETMILEEQTLDLPQQTSQQEPRISCGSELLDEQFDASEEHSGT 744


>Z46828-3|CAA86858.2|  363|Caenorhabditis elegans Hypothetical
           protein R03D7.5 protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 4   EAEVVYKSLEDAQRAAELYHNRELDGQPMNCLVVPFLPRILPRRRYSG 147
           E +++ K    A      +++R  + + +NCLV+ +LP+ L R R  G
Sbjct: 68  EIQILSKLFHPAISNLLYFYSRNANDKVINCLVLDYLPQDLARLRDQG 115


>Z77662-4|CAB01193.1|  248|Caenorhabditis elegans Hypothetical
           protein F47B8.4 protein.
          Length = 248

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
 Frame = -3

Query: 67  DCDTVPQLFV----RLLEIYKRLLPR 2
           DC+T PQLFV      L I K LLP+
Sbjct: 215 DCETFPQLFVDGAFEPLPILKNLLPK 240


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 52  ELYHNRELDGQPMNCLVVPFLPRILPRRRYSGHYISG 162
           +++ N  +     N  + P  P  +PR  YSG +I G
Sbjct: 783 DVFDNCNVATSGFNVTIPPLAPNEMPRACYSGIFIGG 819


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 52  ELYHNRELDGQPMNCLVVPFLPRILPRRRYSGHYISG 162
           +++ N  +     N  + P  P  +PR  YSG +I G
Sbjct: 783 DVFDNCNVATSGFNVTIPPLAPNEMPRACYSGIFIGG 819


>Z47357-2|CAD54175.1|  464|Caenorhabditis elegans Hypothetical
           protein ZK1128.2b protein.
          Length = 464

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 151 NDQSIVVLVEFLVKTGLPSNS*AVHPTPDCDTV 53
           +++S+ V  E + K GL S+   VH  PD  TV
Sbjct: 118 DEKSVRVAHENVAKNGLSSSICVVHVNPDVKTV 150


>Z47357-1|CAA87421.2|  479|Caenorhabditis elegans Hypothetical
           protein ZK1128.2a protein.
          Length = 479

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 151 NDQSIVVLVEFLVKTGLPSNS*AVHPTPDCDTV 53
           +++S+ V  E + K GL S+   VH  PD  TV
Sbjct: 133 DEKSVRVAHENVAKNGLSSSICVVHVNPDVKTV 165


>U58746-7|AAB00628.2|  461|Caenorhabditis elegans Hypothetical
           protein R05G6.10 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -1

Query: 105 DYQAIHRLSIQLPIVIQFRSSLCVF 31
           ++ A ++L+ QL  VIQ++S++C F
Sbjct: 390 NFMAFNQLAEQLRDVIQWKSTVCTF 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,810,067
Number of Sequences: 27780
Number of extensions: 160010
Number of successful extensions: 315
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)