Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D20
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 180 6e-47
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 180 9e-47
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 180 9e-47
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 92 4e-20
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 88 5e-19
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 46 2e-06
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 1.6
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 2.9
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 3.8
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 25 3.8
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 5.0
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 6.7
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 24 8.8
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 24 8.8
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 180 bits (439), Expect = 6e-47
Identities = 82/121 (67%), Positives = 101/121 (83%)
Frame = +1
Query: 73 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEI 252
CAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++RFEEI
Sbjct: 111 CAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEI 168
Query: 253 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIE 432
KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW E K G +GK L+E
Sbjct: 169 VKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLE 228
Query: 433 A 435
A
Sbjct: 229 A 229
Score = 39.1 bits (87), Expect = 3e-04
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2
Query: 8 AEGHRDFIKNMITGTSQA 61
A GHRDFIKNMITGTSQA
Sbjct: 92 APGHRDFIKNMITGTSQA 109
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 180 bits (438), Expect = 9e-47
Identities = 81/121 (66%), Positives = 101/121 (83%)
Frame = +1
Query: 73 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEI 252
CA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++RFEEI
Sbjct: 111 CAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEI 168
Query: 253 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIE 432
KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW E K G +GK L+E
Sbjct: 169 VKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLE 228
Query: 433 A 435
A
Sbjct: 229 A 229
Score = 39.1 bits (87), Expect = 3e-04
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2
Query: 8 AEGHRDFIKNMITGTSQA 61
A GHRDFIKNMITGTSQA
Sbjct: 92 APGHRDFIKNMITGTSQA 109
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 180 bits (438), Expect = 9e-47
Identities = 81/121 (66%), Positives = 101/121 (83%)
Frame = +1
Query: 73 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEI 252
CA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++RFEEI
Sbjct: 111 CAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEI 168
Query: 253 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIE 432
KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GW E K G +GK L+E
Sbjct: 169 VKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLE 228
Query: 433 A 435
A
Sbjct: 229 A 229
Score = 39.1 bits (87), Expect = 3e-04
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2
Query: 8 AEGHRDFIKNMITGTSQA 61
A GHRDFIKNMITGTSQA
Sbjct: 92 APGHRDFIKNMITGTSQA 109
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 91.9 bits (218), Expect = 4e-20
Identities = 43/105 (40%), Positives = 70/105 (66%), Gaps = 4/105 (3%)
Frame = +1
Query: 79 VLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKK 258
VL+++A GEFEAG + GQTREHA+LA T G+ L+V +NKMD +SE R++E
Sbjct: 344 VLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVD 403
Query: 259 EVSSYIKKI-GYNPAA-VAFVPISGWHGDNMLE--PSTKMPWFKG 381
++S +++++ GYN V ++P+S + G N+ + S+ PW++G
Sbjct: 404 KLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQG 448
Score = 27.1 bits (57), Expect = 1.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 8 AEGHRDFIKNMITGTSQA 61
A GH+ ++ NMI G SQA
Sbjct: 323 APGHKGYVTNMINGASQA 340
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 88.2 bits (209), Expect = 5e-19
Identities = 47/105 (44%), Positives = 65/105 (61%), Gaps = 3/105 (2%)
Frame = +1
Query: 76 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIK 255
AVL+V + FE G +NGQTREHA L LG+ +++V VNK+D +SE RF+EIK
Sbjct: 282 AVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIK 339
Query: 256 KEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKG 381
VS + IK +G+ + V FVPIS G N++ + S W+KG
Sbjct: 340 NIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG 384
Score = 28.7 bits (61), Expect = 0.41
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 8 AEGHRDFIKNMITGTSQA 61
A GHRDFI MI G S A
Sbjct: 262 APGHRDFISGMIAGASSA 279
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 46.4 bits (105), Expect = 2e-06
Identities = 26/66 (39%), Positives = 40/66 (60%)
Frame = +1
Query: 76 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIK 255
A+++V+A G+ QTREH LLA +GVKQ++V +NK+D EP E E++
Sbjct: 143 AIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMR 195
Query: 256 KEVSSY 273
+ +S Y
Sbjct: 196 ELLSEY 201
Score = 27.5 bits (58), Expect = 0.94
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 14 GHRDFIKNMITGTS 55
GH D+IKNMITG +
Sbjct: 125 GHADYIKNMITGAA 138
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 1.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 212 PLSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLS 313
P S +++ +K +LPTS K++T PS+S
Sbjct: 402 PTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVS 435
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 2.9
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 205 MDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 375
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 3.8
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 136 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI 276
QT EH + +K +I+ NK+D +E ++ I K + +
Sbjct: 149 QTSEHLAAIEIMQLKHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 214 TEPPYSESRFEEIKKEVSSYIKK 282
+EPP + S +E+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 5.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 256 KEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 381
KEVS SYI +P +G+ +N+++P + P FKG
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKG 203
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +2
Query: 257 RKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVRKE 406
R+S S + + LPS PF++ + + ++P G + +KE
Sbjct: 639 RRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKEGQKKAEARKKKE 688
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 334 GDNMLEPSTKMPWFKGWLVERKEGK 408
GD +L + PW+ L+ RKE K
Sbjct: 53 GDRILVKAPGYPWWPALLLRRKETK 77
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 8.8
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 215 LSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLSYPFLAGTEITCWS 352
LS+ T L + KSL ++ +T R+ +L+ P++ +CW+
Sbjct: 414 LSNDTNKLAVYMGFYKSLQSAGAAITYRMDTLNIPYM-NYFASCWA 458
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,863,969
Number of Sequences: 5004
Number of extensions: 38457
Number of successful extensions: 166
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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