Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D20
(436 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 207 3e-54
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 207 3e-54
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 138 2e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 92 2e-19
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 92 2e-19
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 91 3e-19
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 77 4e-15
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 37 0.005
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 37 0.005
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 36 0.010
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 36 0.010
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 36 0.010
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.12
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 31 0.36
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 27 5.9
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 27 5.9
U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical pr... 27 5.9
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 27 5.9
U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical pr... 27 7.8
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 207 bits (505), Expect = 3e-54
Identities = 97/121 (80%), Positives = 105/121 (86%)
Frame = +1
Query: 73 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEI 252
CAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE+RF EI
Sbjct: 111 CAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEI 170
Query: 253 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIE 432
EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+E
Sbjct: 171 TNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLE 230
Query: 433 A 435
A
Sbjct: 231 A 231
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2
Query: 8 AEGHRDFIKNMITGTSQA 61
A GHRDFIKNMITGTSQA
Sbjct: 92 APGHRDFIKNMITGTSQA 109
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 207 bits (505), Expect = 3e-54
Identities = 97/121 (80%), Positives = 105/121 (86%)
Frame = +1
Query: 73 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEI 252
CAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE+RF EI
Sbjct: 111 CAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEI 170
Query: 253 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIE 432
EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+E
Sbjct: 171 TNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLE 230
Query: 433 A 435
A
Sbjct: 231 A 231
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2
Query: 8 AEGHRDFIKNMITGTSQA 61
A GHRDFIKNMITGTSQA
Sbjct: 92 APGHRDFIKNMITGTSQA 109
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 138 bits (334), Expect = 2e-33
Identities = 62/84 (73%), Positives = 70/84 (83%)
Frame = +1
Query: 184 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 363
L+V NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 364 MPWFKGWLVERKEGKAEGKCLIEA 435
MPWFKGW VERKEG A GK L+EA
Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEA 197
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2
Query: 8 AEGHRDFIKNMITGTSQA 61
A GHRDFIKNMITGTSQA
Sbjct: 92 APGHRDFIKNMITGTSQA 109
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 91.9 bits (218), Expect = 2e-19
Identities = 46/103 (44%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Frame = +1
Query: 76 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIK 255
A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK
Sbjct: 275 AILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIK 332
Query: 256 KEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 381
+S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ G
Sbjct: 333 NNLSVFLTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWYDG 372
Score = 35.9 bits (79), Expect = 0.013
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +2
Query: 8 AEGHRDFIKNMITGTSQA 61
A GH+DFI NMITGTSQA
Sbjct: 255 APGHKDFISNMITGTSQA 272
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 91.9 bits (218), Expect = 2e-19
Identities = 46/103 (44%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Frame = +1
Query: 76 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIK 255
A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK
Sbjct: 293 AILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIK 350
Query: 256 KEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 381
+S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ G
Sbjct: 351 NNLSVFLTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWYDG 390
Score = 35.9 bits (79), Expect = 0.013
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +2
Query: 8 AEGHRDFIKNMITGTSQA 61
A GH+DFI NMITGTSQA
Sbjct: 273 APGHKDFISNMITGTSQA 290
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 91.1 bits (216), Expect = 3e-19
Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 3/105 (2%)
Frame = +1
Query: 76 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIK 255
AVL+++A GEFE G + GQTREH++L T GVK L++ VNKMD + E RF+EI+
Sbjct: 214 AVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIE 273
Query: 256 KEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPST--KMPWFKG 381
+++ +++K+G+NP + +VP SG G + + T + W+ G
Sbjct: 274 GKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSEGNWYSG 318
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 8 AEGHRDFIKNMITGTSQA 61
A GH+ F+ NMI G +QA
Sbjct: 194 APGHKSFVPNMIVGANQA 211
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 77.4 bits (182), Expect = 4e-15
Identities = 41/62 (66%), Positives = 46/62 (74%)
Frame = +1
Query: 73 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEI 252
CAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R + I
Sbjct: 111 CAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSDTI 167
Query: 253 KK 258
++
Sbjct: 168 QR 169
Score = 41.1 bits (92), Expect = 3e-04
Identities = 27/56 (48%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +2
Query: 248 KSRRKSLPTSRKLVTI-RLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVRKERL 412
+S +S +SR+ TI RL LS TE TC P CHGSRDG L+ RKE L
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQS-PDSTETTCLRSPRTCHGSRDGLLNARKETL 206
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2
Query: 8 AEGHRDFIKNMITGTSQA 61
A GHRDFIKNMITGTSQA
Sbjct: 92 APGHRDFIKNMITGTSQA 109
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 37.1 bits (82), Expect = 0.005
Identities = 25/80 (31%), Positives = 39/80 (48%)
Frame = +1
Query: 76 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIK 255
AVL++AA G E QT+EH +LA +GVK + + +NK D E E + ++
Sbjct: 135 AVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVE 183
Query: 256 KEVSSYIKKIGYNPAAVAFV 315
E + G+N A +
Sbjct: 184 MEARELLSLHGFNGDATPVI 203
Score = 31.5 bits (68), Expect = 0.27
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +2
Query: 14 GHRDFIKNMITGTSQ 58
GH DFIKNMI GTSQ
Sbjct: 117 GHSDFIKNMICGTSQ 131
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 37.1 bits (82), Expect = 0.005
Identities = 25/80 (31%), Positives = 39/80 (48%)
Frame = +1
Query: 76 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIK 255
AVL++AA G E QT+EH +LA +GVK + + +NK D E E + ++
Sbjct: 135 AVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVE 183
Query: 256 KEVSSYIKKIGYNPAAVAFV 315
E + G+N A +
Sbjct: 184 MEARELLSLHGFNGDATPVI 203
Score = 31.5 bits (68), Expect = 0.27
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +2
Query: 14 GHRDFIKNMITGTSQ 58
GH DFIKNMI GTSQ
Sbjct: 117 GHSDFIKNMICGTSQ 131
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 36.3 bits (80), Expect = 0.010
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +1
Query: 76 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSESRFEE 249
A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E+R E
Sbjct: 139 AILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-EL 188
Query: 250 IKKEVSSYIKKIGY 291
++ ++ + + GY
Sbjct: 189 VEMDIREQLNEFGY 202
Score = 30.3 bits (65), Expect = 0.63
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 14 GHRDFIKNMITGTSQALG 67
GH D+IKNMITG +Q G
Sbjct: 121 GHADYIKNMITGAAQMEG 138
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 36.3 bits (80), Expect = 0.010
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +1
Query: 76 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSESRFEE 249
A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E+R E
Sbjct: 140 AILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-EL 189
Query: 250 IKKEVSSYIKKIGY 291
++ ++ + + GY
Sbjct: 190 VEMDIREQLNEFGY 203
Score = 30.3 bits (65), Expect = 0.63
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 14 GHRDFIKNMITGTSQALG 67
GH D+IKNMITG +Q G
Sbjct: 122 GHADYIKNMITGAAQMEG 139
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 36.3 bits (80), Expect = 0.010
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +1
Query: 76 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSESRFEE 249
A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E+R E
Sbjct: 140 AILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-EL 189
Query: 250 IKKEVSSYIKKIGY 291
++ ++ + + GY
Sbjct: 190 VEMDIREQLNEFGY 203
Score = 30.3 bits (65), Expect = 0.63
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 14 GHRDFIKNMITGTSQALG 67
GH D+IKNMITG +Q G
Sbjct: 122 GHADYIKNMITGAAQMEG 139
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 32.7 bits (71), Expect = 0.12
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -3
Query: 203 LFTPTISCLTPSVKASRACSRVCPFFEIPASNSPVPAATISTA 75
LF PT+SC+ AS S P PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 31.1 bits (67), Expect = 0.36
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 136 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGY--NPAAVA 309
QT EH LLA ++I+ +NK D E +S+ E K+V +K +G N V
Sbjct: 112 QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDENSPIVE 167
Query: 310 FVPISGWHGDNMLE 351
G+ + ML+
Sbjct: 168 MSLADGYFKEEMLQ 181
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 211 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 327
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 246 LKSRLTVWWLSGVHFVYSYN 187
+KS L ++WL V+F +SYN
Sbjct: 250 IKSLLHIFWLPHVYFPFSYN 269
>U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical
protein T03G11.3 protein.
Length = 349
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 194 PTISCLTPSVKASRACSRVCPFFE--IPASNSPVPAATISTA 75
PT+ +TPS K S + R P + P PA+T +TA
Sbjct: 270 PTLPPMTPSSKRSSSAKRDAPLQQSSTPQQRLKTPASTTTTA 311
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 211 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 327
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical
protein F53B3.6 protein.
Length = 321
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 324 RNGYESDGSRIVTNFLDVGRDFLLDFLKSRLT 229
RN Y +DG ++ D+GRD DF S T
Sbjct: 101 RNEYPNDGGVVIPIRRDIGRDPQYDFRSSPQT 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,327,393
Number of Sequences: 27780
Number of extensions: 212855
Number of successful extensions: 782
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -