Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D20
(436 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 249 1e-68
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 249 1e-68
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 249 1e-68
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 231 3e-63
AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8 ... 25 0.37
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 23 2.0
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 22 3.4
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 21 4.5
AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 21 6.0
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 21 7.9
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 249 bits (609), Expect = 1e-68
Identities = 116/121 (95%), Positives = 118/121 (97%)
Frame = +1
Query: 73 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEI 252
CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE+RFEEI
Sbjct: 38 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEI 97
Query: 253 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIE 432
KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK EGKCLIE
Sbjct: 98 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIE 157
Query: 433 A 435
A
Sbjct: 158 A 158
Score = 39.1 bits (87), Expect = 2e-05
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2
Query: 8 AEGHRDFIKNMITGTSQA 61
A GHRDFIKNMITGTSQA
Sbjct: 19 APGHRDFIKNMITGTSQA 36
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 249 bits (609), Expect = 1e-68
Identities = 116/121 (95%), Positives = 118/121 (97%)
Frame = +1
Query: 73 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEI 252
CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE+RFEEI
Sbjct: 54 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEI 113
Query: 253 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIE 432
KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK EGKCLIE
Sbjct: 114 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIE 173
Query: 433 A 435
A
Sbjct: 174 A 174
Score = 39.1 bits (87), Expect = 2e-05
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2
Query: 8 AEGHRDFIKNMITGTSQA 61
A GHRDFIKNMITGTSQA
Sbjct: 35 APGHRDFIKNMITGTSQA 52
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 249 bits (609), Expect = 1e-68
Identities = 116/121 (95%), Positives = 118/121 (97%)
Frame = +1
Query: 73 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEI 252
CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE+RFEEI
Sbjct: 111 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEI 170
Query: 253 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIE 432
KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK EGKCLIE
Sbjct: 171 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIE 230
Query: 433 A 435
A
Sbjct: 231 A 231
Score = 39.1 bits (87), Expect = 2e-05
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2
Query: 8 AEGHRDFIKNMITGTSQA 61
A GHRDFIKNMITGTSQA
Sbjct: 92 APGHRDFIKNMITGTSQA 109
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 231 bits (564), Expect = 3e-63
Identities = 107/121 (88%), Positives = 113/121 (93%)
Frame = +1
Query: 73 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEI 252
CAVLIVAAG GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD T+PPYSE+RFEEI
Sbjct: 111 CAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEI 170
Query: 253 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIE 432
KKEVSSYIKKIGYN A+VAFVPISGWHGDNMLEPS K PW+KGW VERK+G A+GK LIE
Sbjct: 171 KKEVSSYIKKIGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLIE 230
Query: 433 A 435
A
Sbjct: 231 A 231
Score = 39.1 bits (87), Expect = 2e-05
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2
Query: 8 AEGHRDFIKNMITGTSQA 61
A GHRDFIKNMITGTSQA
Sbjct: 92 APGHRDFIKNMITGTSQA 109
>AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8
protein.
Length = 208
Score = 25.0 bits (52), Expect = 0.37
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 302 PSLSYPFLAGTEITC-WSRPPKCHGSRDGWLSVRKE 406
P+L F G + C SRP +C G DG++ KE
Sbjct: 160 PALEEQFATGRVLACISSRPGQC-GREDGYILEGKE 194
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 22.6 bits (46), Expect = 2.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 306 DGSRIVTNFLDVGRDFL 256
DG R+V F+DV +D +
Sbjct: 531 DGQRLVYQFVDVPKDII 547
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 21.8 bits (44), Expect = 3.4
Identities = 8/32 (25%), Positives = 16/32 (50%)
Frame = +1
Query: 226 YSESRFEEIKKEVSSYIKKIGYNPAAVAFVPI 321
Y+ S + ++Y KK+ YN + +P+
Sbjct: 89 YNYSNYNNYNNNYNNYNKKLYYNINYIEQIPV 120
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 21.4 bits (43), Expect = 4.5
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +2
Query: 71 PAPCLLSPLVLVNSKPVS 124
P PC+L P L K +S
Sbjct: 36 PQPCILKPKPLWTGKQIS 53
>AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase
beta-3 protein.
Length = 832
Score = 21.0 bits (42), Expect = 6.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1
Query: 226 YSESRFEEIKKEVS 267
Y E R+EEI+++ S
Sbjct: 17 YGEDRWEEIRRQAS 30
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 20.6 bits (41), Expect = 7.9
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = +2
Query: 248 KSRRKSLPTSRKLVTIRLPSLSYPFLAGTEITCW 349
K + K+ PTS V+ +++ + G + CW
Sbjct: 252 KPQTKTKPTSPYHVSDHKAAITVGVIMGVFLICW 285
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,200
Number of Sequences: 438
Number of extensions: 2370
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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