Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D19
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    65   3e-12
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    34   0.008
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    27   0.88 
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   3.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   4.7  
SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces pombe...    25   4.7  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    24   6.2  
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    24   8.2  

>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 65.3 bits (152), Expect = 3e-12
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
 Frame = +3

Query: 27  TGGLVQEFEHAVLPSIKPNVTFILTCLSMA-PALVKLWWLCADRRYRNMNFLRCLVVCST 203
           T GLV E   AVLP+I P +TF + CL +    L+KL+     R      F+  + +C  
Sbjct: 299 TRGLVGESSFAVLPNIPPALTFYI-CLGLQITVLIKLFIKPTWRV-----FVGAVTLCGW 352

Query: 204 CSFMFGWHVHEKAILLILVPMSII 275
            SF+FGWHVHEKAIL++++P SI+
Sbjct: 353 ISFLFGWHVHEKAILMVILPFSIL 376


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 33.9 bits (74), Expect = 0.008
 Identities = 22/64 (34%), Positives = 36/64 (56%)
 Frame = +3

Query: 84  VTFILTCLSMAPALVKLWWLCADRRYRNMNFLRCLVVCSTCSFMFGWHVHEKAILLILVP 263
           ++ I T +S+ P+ V L+ L   +R   + F       S   F+F + VHEK++LL L+P
Sbjct: 319 ISLIFTLISILPSCVILF-LYPRKRLLALGFASA----SWGFFLFSFQVHEKSVLLPLLP 373

Query: 264 MSII 275
            SI+
Sbjct: 374 TSIL 377


>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 27.1 bits (57), Expect = 0.88
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 54  HAVLPSIKPNVTFILTCLSMAPALVKL 134
           H VLP I P+  F L CL + P  + L
Sbjct: 191 HNVLPLITPSYFFTLLCLILPPLQITL 217


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
 Frame = -3

Query: 189 PGTLKNSYFCI--------ACQHTATRVLPTQAPSIN 103
           P T +N+Y  +        A   T + +LPTQ+PS+N
Sbjct: 140 PATFENNYSVLPDHSSQPNAYSFTGSNILPTQSPSLN 176


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 239  GDFVDSSTYEYHPGVWNL 292
            G+++DS+   YHP  W+L
Sbjct: 2541 GEYLDSAHKVYHPKEWSL 2558


>SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 94

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 150 DRRYRNMNFLRCLVVCSTCSFMFGWHVHEKAI 245
           +R Y    F   L+   TCS +F W V +K I
Sbjct: 18  ERSYSRKAFFH-LIGYITCSVLFSWLVRKKVI 48


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 290 NSKLRDDTHRY*NQQNRLFMNMPSKH 213
           + K RD ++RY N  NRL    P  H
Sbjct: 143 DKKHRDKSYRYFNNINRLAKEYPLAH 168


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 60  VLPSIKPNVTFILTCLSMAPALVKLWWLCADRRYRNMN 173
           V+P +   +  IL  +   P+   +WWL  D    N N
Sbjct: 132 VVPPVWGKMPAILQTMRKYPSAKWIWWLDQDALIMNKN 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,627,352
Number of Sequences: 5004
Number of extensions: 34367
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)