Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D19
(359 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0356 + 28252154-28252897,28253171-28253377,28253473-282537... 73 9e-14
01_03_0242 + 14113721-14113966,14114102-14114260,14114495-141148... 28 1.9
01_06_1174 - 35126903-35127015,35127096-35127160,35127417-351275... 28 2.5
01_06_1015 + 33819203-33821827 28 2.5
08_02_1414 + 26901937-26902597,26903361-26903397,26903733-269037... 27 3.4
01_03_0153 + 13255667-13255954,13258383-13258529,13258798-132589... 27 4.4
05_01_0413 - 3253345-3253461,3253595-3253666,3253763-3253876,325... 27 5.9
12_02_1060 - 25752181-25754229 26 7.7
12_01_0301 - 2280215-2281154,2281271-2281338 26 7.7
04_04_0037 + 22309681-22310532,22310638-22310977,22311613-22311749 26 7.7
>02_05_0356 +
28252154-28252897,28253171-28253377,28253473-28253710,
28254853-28255220
Length = 518
Score = 72.5 bits (170), Expect = 9e-14
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Frame = +3
Query: 15 EGSMTGGLV-QEFEHAVLPSIKPNVTFILTCLSMAPALVKLWWLCADRRYRNMNFLRCLV 191
E S TGGLV AVLP + P TF+L L+M+P L+K A + + + +R +
Sbjct: 298 EASFTGGLVGNSSPFAVLPKVTPITTFLLVILAMSPCLMK-----AFSKPQPRHIIRWVS 352
Query: 192 VCSTCSFMFGWHVHEKAILLILVPMSII 275
+TC FMFGWHVHEKA L +P+++I
Sbjct: 353 YATTCGFMFGWHVHEKASLHFTIPLALI 380
>01_03_0242 +
14113721-14113966,14114102-14114260,14114495-14114868,
14114939-14115419,14115651-14116192,14116253-14116531,
14116837-14116918,14116994-14117086,14117173-14117367
Length = 816
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 54 HAVLPSIKPNVTFILTCLSMAPALVKLWWLCADRRYRNMNFLRCLVVCST 203
HA K N+ + C S +K W+ A+R ++ ++ +VC T
Sbjct: 585 HAFFKMDKMNINLVGACYSNFQNSIKSQWVDAERTGASIGYVNPTMVCET 634
>01_06_1174 -
35126903-35127015,35127096-35127160,35127417-35127503,
35128560-35128731,35128874-35128919
Length = 160
Score = 27.9 bits (59), Expect = 2.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 312 LAPCHIWDGTKLGEMW 359
L PCH+ +G LG MW
Sbjct: 76 LRPCHVGEGIVLGSMW 91
>01_06_1015 + 33819203-33821827
Length = 874
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 220 PNMNEQVEQTTRHLKKFIFLYRLSAHSHQSFTNAGAIDKHVNINVT 83
P ++Q T L K F++R S + FT++ +DK + IN T
Sbjct: 596 PLKDDQALDTDAQLMKADFIFRSSYFKTKHFTHSIDLDKFLEINGT 641
>08_02_1414 +
26901937-26902597,26903361-26903397,26903733-26903791,
26904198-26904388,26904591-26904680,26904833-26904926,
26905008-26905159,26905250-26905347,26905400-26905459,
26905460-26905598,26905686-26905784,26905883-26906018,
26906352-26906413
Length = 625
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 313 SLSPYRAQIPNSGMILIGTRIN 248
SL+PY IPN I +G R+N
Sbjct: 65 SLAPYNPNIPNLDFINVGGRVN 86
>01_03_0153 +
13255667-13255954,13258383-13258529,13258798-13258932,
13259344-13259461,13260925-13261049,13261407-13261532,
13261617-13261697,13262188-13262250,13262328-13262402,
13263439-13263517,13263627-13263727,13263952-13264065,
13264225-13264338,13264406-13264477,13264561-13264608
Length = 561
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 280 SGMILIGTRINKIAFS*TCHPNMNEQVEQTTRHLK 176
S I +GTR+ I F+ HP ++E +++ + K
Sbjct: 512 SNAIALGTRVQDIKFAVHAHPTLSEVLDELFKAAK 546
>05_01_0413 -
3253345-3253461,3253595-3253666,3253763-3253876,
3254050-3254163,3254420-3254520,3254616-3254694,
3254789-3254863,3254955-3255017,3255281-3255361,
3255449-3255574,3255898-3256022,3256722-3256839,
3257420-3257554,3258029-3258175,3259016-3259321
Length = 590
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 280 SGMILIGTRINKIAFS*TCHPNMNEQVEQTTRHLK 176
S I +GTR+ I F+ HP ++E +++ + K
Sbjct: 518 SNAIALGTRLQDIKFAVHAHPTLSEVLDELFKAAK 552
>12_02_1060 - 25752181-25754229
Length = 682
Score = 26.2 bits (55), Expect = 7.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 81 NVTFILTCLSMAPALVKLWWLCADRRYRNMNFLRCLV 191
N T CL+MAPA+V+ C R N N+ CL+
Sbjct: 93 NATECQKCLAMAPAVVQ--HPCRGSRSVNANYDACLL 127
>12_01_0301 - 2280215-2281154,2281271-2281338
Length = 335
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +2
Query: 221 MACS*KGDFVDSSTYEYHPGVWNLCPIWRQ 310
M CS D + P W+L PIW Q
Sbjct: 229 MDCSTVVDTAKKGNFHEDPSHWSLLPIWSQ 258
>04_04_0037 + 22309681-22310532,22310638-22310977,22311613-22311749
Length = 442
Score = 26.2 bits (55), Expect = 7.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 90 FILTCLSMAPALVKLWWLCADRRY 161
F+L C +A A K++W CA+R +
Sbjct: 149 FVLPCF-LADAAYKVYWYCANRPF 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,932,874
Number of Sequences: 37544
Number of extensions: 230339
Number of successful extensions: 613
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -