Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D19
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical p...    67   4e-12
Z46676-6|CAA86666.1|  503|Caenorhabditis elegans Hypothetical pr...    36   0.011
Z81467-4|CAB03873.2|  451|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z74030-16|CAI79165.1|  481|Caenorhabditis elegans Hypothetical p...    27   3.0  
Z74030-15|CAI79164.1|  477|Caenorhabditis elegans Hypothetical p...    27   3.0  
Z74030-7|CAA98447.2|  559|Caenorhabditis elegans Hypothetical pr...    27   3.0  
Z74030-6|CAA98444.2|  508|Caenorhabditis elegans Hypothetical pr...    27   3.0  
AL032635-2|CAB63378.1|  120|Caenorhabditis elegans Hypothetical ...    27   3.0  
Z81107-8|CAB03231.3|  282|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AF016428-3|AAO26000.3|  445|Caenorhabditis elegans Ground-like (...    27   5.2  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical
           protein C08H9.3a protein.
          Length = 758

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 35/82 (42%), Positives = 51/82 (62%)
 Frame = +3

Query: 27  TGGLVQEFEHAVLPSIKPNVTFILTCLSMAPALVKLWWLCADRRYRNMNFLRCLVVCSTC 206
           T GLVQE+ H+VLP++ P  T    CL +  +++ L  L   RR  + +F    V  + C
Sbjct: 307 TSGLVQEYSHSVLPNVSPMGTL---CLVVISSMIVLTGLVI-RRKDSADFSLFAVFSAFC 362

Query: 207 SFMFGWHVHEKAILLILVPMSI 272
            F FG+HVHEKAI+L+ VPM++
Sbjct: 363 FFYFGYHVHEKAIILVTVPMTV 384


>Z46676-6|CAA86666.1|  503|Caenorhabditis elegans Hypothetical
           protein C08B11.8 protein.
          Length = 503

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +3

Query: 63  LPSIKPNVTFILTCLSMAPALVKLWWLCADRRYRNMNFLRCLVVCSTCSFMFGWHVHEKA 242
           L S++  ++  L     AP+L+ L+    ++++R       L       F+F +HVHEK 
Sbjct: 328 LQSVQIYISTALVLAGSAPSLLVLFLRPTEKQFRIS-----LTATGLSFFLFSFHVHEKT 382

Query: 243 ILLILVP-MSIIPEF 284
           ILL  VP + +I E+
Sbjct: 383 ILLAAVPALLLISEY 397


>Z81467-4|CAB03873.2|  451|Caenorhabditis elegans Hypothetical
           protein C12C8.2a protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -2

Query: 331 QM*QGASLSPYRAQIPNSGMILIGTRINKIA 239
           Q+  G+SLSPY A +   G+  +G R+++I+
Sbjct: 295 QLTTGSSLSPYDAALLTRGLKTLGLRVDRIS 325


>Z74030-16|CAI79165.1|  481|Caenorhabditis elegans Hypothetical
           protein D1054.9e protein.
          Length = 481

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 219 QT*TNRLNKRPGTLKNSYFCIACQHTATRVLPTQAPS 109
           Q  T    K P +LK+ Y  I  + T T   PT+AP+
Sbjct: 141 QAPTTTTKKMPKSLKSIYSTIVAKTTTTTEEPTKAPA 177


>Z74030-15|CAI79164.1|  477|Caenorhabditis elegans Hypothetical
           protein D1054.9d protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 219 QT*TNRLNKRPGTLKNSYFCIACQHTATRVLPTQAPS 109
           Q  T    K P +LK+ Y  I  + T T   PT+AP+
Sbjct: 141 QAPTTTTKKMPKSLKSIYSTIVAKTTTTTEEPTKAPA 177


>Z74030-7|CAA98447.2|  559|Caenorhabditis elegans Hypothetical
           protein D1054.9b protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 219 QT*TNRLNKRPGTLKNSYFCIACQHTATRVLPTQAPS 109
           Q  T    K P +LK+ Y  I  + T T   PT+AP+
Sbjct: 141 QAPTTTTKKMPKSLKSIYSTIVAKTTTTTEEPTKAPA 177


>Z74030-6|CAA98444.2|  508|Caenorhabditis elegans Hypothetical
           protein D1054.9a protein.
          Length = 508

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 219 QT*TNRLNKRPGTLKNSYFCIACQHTATRVLPTQAPS 109
           Q  T    K P +LK+ Y  I  + T T   PT+AP+
Sbjct: 141 QAPTTTTKKMPKSLKSIYSTIVAKTTTTTEEPTKAPA 177


>AL032635-2|CAB63378.1|  120|Caenorhabditis elegans Hypothetical
           protein Y51A2A.4 protein.
          Length = 120

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 165 NMNFLRCLVVCSTCSFMFGW--HVHEKAILLILVPMSIIPEFGICARYGDRLAPCH 326
           NMNF+ CL+    C   FG+  ++H+ A  +I      I +  + A    RL+  H
Sbjct: 6   NMNFIVCLLALIACVANFGFCQNIHDAASNIIGHATGAIGDADVAASANLRLSHGH 61


>Z81107-8|CAB03231.3|  282|Caenorhabditis elegans Hypothetical
           protein R07H5.9 protein.
          Length = 282

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -2

Query: 229 TCHPNMNEQVEQTTRHLKKFIFLYRLSAHSHQSFTNAGAIDKHVNINVTLGFID 68
           TC+ +   + + + +  KK     R S   H+ F N G++D++  +NV +  I+
Sbjct: 158 TCYDSEPTKSDTSKKSSKKSRKSSRSSKVPHRKFKNVGSLDENGCVNVKVVVIE 211


>AF016428-3|AAO26000.3|  445|Caenorhabditis elegans Ground-like
          (grd related) protein18 protein.
          Length = 445

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 82 LGFIDGNTACSNSCTKPP 29
          LGF   N  C NSC+ PP
Sbjct: 26 LGFGSMNCQCQNSCSSPP 43


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 69  SIKPNVTFILTCLSMAPALVKLWWLCADRRYRNMNFLRCLVVCSTCSFM 215
           SIK ++ F+++ L    A+   W L     YR +    CL+     +F+
Sbjct: 100 SIKQSIMFMMSPLGSLLAMYPTWMLIMKFGYRRICSTTCLISTFLTAFL 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,220,307
Number of Sequences: 27780
Number of extensions: 201799
Number of successful extensions: 482
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)