Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D17
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 184 5e-48
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 181 6e-47
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 0.40
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 2.8
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 3.7
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 4.9
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 6.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 8.6
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 25 8.6
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 184 bits (449), Expect = 5e-48
Identities = 87/168 (51%), Positives = 122/168 (72%)
Frame = +1
Query: 4 RGPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAED 183
+ P+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D E +FRK +L ED
Sbjct: 33 KAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVED 90
Query: 184 VQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQ 363
+QG++ L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF IGFT +
Sbjct: 91 IQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQV 150
Query: 364 RKTCYAQHTQVRAIRKKMCEIVTRDVTSSELREVVNKLIPDSIAKDIE 507
+KT YAQ +Q+RAIR+KM +++ +S +RE+V KLIP+ I ++IE
Sbjct: 151 KKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIE 198
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 181 bits (440), Expect = 6e-47
Identities = 85/168 (50%), Positives = 119/168 (70%)
Frame = +1
Query: 4 RGPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAED 183
+ P+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D E SFRK +L ED
Sbjct: 33 KAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVED 90
Query: 184 VQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQ 363
+QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F IGFT++
Sbjct: 91 IQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQV 150
Query: 364 RKTCYAQHTQVRAIRKKMCEIVTRDVTSSELREVVNKLIPDSIAKDIE 507
+KT YAQ +Q+RAI +KM +++ ++E+V KLIP+ I + IE
Sbjct: 151 KKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIE 198
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 29.1 bits (62), Expect = 0.40
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 100 VFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 273
VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 274 IEANIDVKTT 303
+E + D++TT
Sbjct: 144 LETSKDLETT 153
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 2.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 325 FCIGFTNKDTLSQRKTCY 378
FC G NKDT+ K C+
Sbjct: 475 FCDGIVNKDTVMTSKACF 492
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.8 bits (54), Expect = 3.7
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 202 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTC 375
L + + + +T +++++ + N + K YV ++ G NK+T S RKTC
Sbjct: 1685 LLSTYMVGFSTSIIQYIIHLILLEFDFNGNNKKQKEYVTQLILSGLLNKNTNSIRKTC 1742
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 223 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 321
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +1
Query: 244 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYA 381
++ W L+ T GYV+R GFT+ + + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 45 PCQSHPGNKNCI*GSKGACF 104
PC H K C G GACF
Sbjct: 347 PCGEHTCKKRCHSGLCGACF 366
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 311 MSYVFSASVSPTRIRSANARHATLSIPKSAQSGKKCVKSSRA 436
+S + SA SPT+ + + + SIPK+ + + ++S A
Sbjct: 396 LSLIPSAVSSPTKANTNKSHQRSFSIPKATKDSQTPSENSAA 437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,099
Number of Sequences: 5004
Number of extensions: 42915
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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