Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D17
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 223 6e-59
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 221 3e-58
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 219 8e-58
03_05_0771 - 27588194-27588877 31 0.40
03_05_0772 - 27591175-27591864 29 1.6
03_05_0770 - 27583855-27584544 29 2.1
03_02_0697 - 10487661-10488342,10490474-10490556 28 3.7
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 27 6.5
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 27 6.5
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845... 27 6.5
09_04_0708 + 19648511-19648808,19649189-19649280,19650850-196510... 27 6.5
06_03_1024 - 26958473-26958661,26958750-26958815,26959234-269593... 27 8.7
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 27 8.7
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 27 8.7
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 223 bits (545), Expect = 6e-59
Identities = 107/168 (63%), Positives = 134/168 (79%)
Frame = +1
Query: 4 RGPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAED 183
+ PS+F R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +++RK RL AED
Sbjct: 33 KAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAED 90
Query: 184 VQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQ 363
VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+FCIGFT +
Sbjct: 91 VQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQV 150
Query: 364 RKTCYAQHTQVRAIRKKMCEIVTRDVTSSELREVVNKLIPDSIAKDIE 507
++TCYAQ +Q+R IR+KM EI+ +S +L+E+V+K IP+ I K+IE
Sbjct: 151 KRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIE 198
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 221 bits (540), Expect = 3e-58
Identities = 107/168 (63%), Positives = 133/168 (79%)
Frame = +1
Query: 4 RGPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAED 183
+ PS+F R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +++RK RL AED
Sbjct: 33 KAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAED 90
Query: 184 VQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQ 363
VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT +
Sbjct: 91 VQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQV 150
Query: 364 RKTCYAQHTQVRAIRKKMCEIVTRDVTSSELREVVNKLIPDSIAKDIE 507
++TCYAQ +Q+R IR+KM EI+ +S +L+E+V+K IP+ I K+IE
Sbjct: 151 KRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIE 198
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 219 bits (536), Expect = 8e-58
Identities = 105/168 (62%), Positives = 134/168 (79%)
Frame = +1
Query: 4 RGPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAED 183
+ P++F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +++RK RL AED
Sbjct: 33 KAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAED 90
Query: 184 VQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQ 363
VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT +
Sbjct: 91 VQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQV 150
Query: 364 RKTCYAQHTQVRAIRKKMCEIVTRDVTSSELREVVNKLIPDSIAKDIE 507
++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IE
Sbjct: 151 KRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIE 198
>03_05_0771 - 27588194-27588877
Length = 227
Score = 31.5 bits (68), Expect = 0.40
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Frame = -2
Query: 390 GMLSVACLALAERILVGETDAENT*DISVSGLN--VNVGFNQCLP-------FLYHPSEF 238
G++ V L +L+ TDA+ D V+ LN V V + C P FL+
Sbjct: 9 GLVFVVLLLQQAPVLIRATDADPLQDFCVADLNSEVTVNGHACKPASAAGDEFLFSSKIA 68
Query: 237 ISGEVHAVEIAENITSLDI 181
G+V+A N+T LD+
Sbjct: 69 TGGDVNANPNGSNVTELDV 87
>03_05_0772 - 27591175-27591864
Length = 229
Score = 29.5 bits (63), Expect = 1.6
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Frame = -2
Query: 417 HFFPDCADLGMLSVACLALAERILVGETDAENT*DISVSGLN--VNVGFNQCLP------ 262
H F A G++ V L +L+ TDA+ D V+ L+ V V + C P
Sbjct: 3 HSFKTIA-AGVVIVVLLLQQAPVLIRATDADPLQDFCVADLDSKVTVNGHACKPASAAGD 61
Query: 261 -FLYHPSEFISGEVHAVEIAENITSLDI 181
FL+ G+V+A N+T LD+
Sbjct: 62 EFLFSSKIATGGDVNANPNGSNVTELDV 89
>03_05_0770 - 27583855-27584544
Length = 229
Score = 29.1 bits (62), Expect = 2.1
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Frame = -2
Query: 390 GMLSVACLALAERILVGETDAENT*DISVSGLN--VNVGFNQCLP-------FLYHPSEF 238
G++ V L +L+ TDA+ D V+ L+ V V + C P FL+
Sbjct: 11 GVVFVVLLLQQAPVLIRATDADPLQDFCVADLDSKVTVNGHACKPASAAGDEFLFSSKIA 70
Query: 237 ISGEVHAVEIAENITSLDI 181
G+V+A N+T LD+
Sbjct: 71 TGGDVNANPNGSNVTELDV 89
>03_02_0697 - 10487661-10488342,10490474-10490556
Length = 254
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 326 SASVSPTRIRSANARHATLSIPKSAQSGKKCVKSSR 433
SA+ + I S+N+ HA+ S P S KC+ SR
Sbjct: 203 SAAKTTAAISSSNSNHASSSAPPPPPSKPKCLWQSR 238
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 173 SLRMSRDVMFSAISTAWTSPLINSDG 250
SL S D+ FS I +AW + SDG
Sbjct: 409 SLESSLDIDFSTIPSAWNDDDVTSDG 434
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 173 SLRMSRDVMFSAISTAWTSPLINSDG 250
SL S D+ FS I +AW + SDG
Sbjct: 466 SLESSLDIDFSTIPSAWNDDDVTSDG 491
>10_06_0143 -
11183574-11183761,11183989-11184344,11184437-11184592,
11184825-11184994,11185906-11186064,11186856-11187164,
11187281-11187576,11187825-11188174,11188279-11188434,
11188634-11188803,11189289-11189447,11190702-11191010,
11191172-11191458,11191911-11192263,11192366-11192521,
11192680-11192849,11195800-11195958,11196937-11197254,
11197658-11197786
Length = 1449
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 178 EDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEAN 285
E +QG LCN +GM T+ LR + W T I N
Sbjct: 180 EKLQGEYQLCNGYGMKKATEVLR---EHWSTYILEN 212
>09_04_0708 +
19648511-19648808,19649189-19649280,19650850-19651000,
19651779-19651906,19652099-19652257,19652325-19652507,
19652978-19653178,19653269-19653289
Length = 410
Score = 27.5 bits (58), Expect = 6.5
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +1
Query: 100 VFEVSLADLQADS----DAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 267
+ ++++ADL S D +R+ ++ ++ E + N L DKL +V Q
Sbjct: 144 LMKIAIADLNNSSISLEDRQRALQELLILVEPIDNANDL----------DKLGGLVAVIQ 193
Query: 268 TLIEANIDVKTTDGYVL 318
L AN +++TT +VL
Sbjct: 194 DLNNANEEIRTTSAWVL 210
>06_03_1024 -
26958473-26958661,26958750-26958815,26959234-26959303,
26959526-26959773,26959938-26960029,26960726-26960871,
26961001-26961185,26961721-26961838,26961948-26962087
Length = 417
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +1
Query: 409 KKMCEIVT--RDVTSSELREVVNKLIPDSI 492
+++C T +DV SS++++ +NK PD +
Sbjct: 191 QQVCSFYTWRKDVKSSDIKDAINKAAPDKL 220
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 40 TTLVNRTQGTKIASEGLKGRVFEV 111
TT+VN + K+A EG+KG ++V
Sbjct: 17 TTIVNLAEEAKLAREGVKGPGYQV 40
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/44 (29%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Frame = +1
Query: 385 HTQVRAIRKKMCEIVTRDVTSSELREVVNKLIP---DSIAKDIE 507
H Q + RK++ ++ + TSS+LRE+ ++L+ ++ +KD++
Sbjct: 1956 HMQSQTKRKQIDHLMELNSTSSQLREIFSELLHHLLNTFSKDVD 1999
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,877,672
Number of Sequences: 37544
Number of extensions: 309796
Number of successful extensions: 798
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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