Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D17
(508 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical pr... 215 2e-56
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical... 29 2.6
AF016415-8|AAW88415.1| 297|Caenorhabditis elegans Serpentine re... 29 2.6
AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical ... 27 5.9
L29440-1|AAA98752.1| 570|Caenorhabditis elegans endoprotease pr... 27 7.8
L29439-1|AAA98751.1| 658|Caenorhabditis elegans endoprotease pr... 27 7.8
L29438-1|AAA98750.1| 684|Caenorhabditis elegans endoprotease pr... 27 7.8
AF106575-15|AAC78164.2| 350|Caenorhabditis elegans Serpentine r... 27 7.8
AF039719-6|AAO12410.1| 666|Caenorhabditis elegans Blistered cut... 27 7.8
AF039719-5|AAB96755.1| 699|Caenorhabditis elegans Blistered cut... 27 7.8
AF039719-4|AAB96753.1| 670|Caenorhabditis elegans Blistered cut... 27 7.8
AF039719-3|AAB96756.1| 730|Caenorhabditis elegans Blistered cut... 27 7.8
AF039719-2|AAB96757.1| 827|Caenorhabditis elegans Blistered cut... 27 7.8
AF039719-1|AAB96754.1| 942|Caenorhabditis elegans Blistered cut... 27 7.8
AC006603-4|AAF39747.2| 379|Caenorhabditis elegans Hypothetical ... 27 7.8
>Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical
protein F56F3.5 protein.
Length = 257
Score = 215 bits (525), Expect = 2e-56
Identities = 106/168 (63%), Positives = 128/168 (76%)
Frame = +1
Query: 4 RGPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAED 183
+ P+MF RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL +++E FRKF+LIAED
Sbjct: 32 KAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL---NNSEADFRKFKLIAED 88
Query: 184 VQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQ 363
VQG+NVL NFH M +T DKL +VKKW TLIEAN VKTTDGY LRVF I FT K
Sbjct: 89 VQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQV 148
Query: 364 RKTCYAQHTQVRAIRKKMCEIVTRDVTSSELREVVNKLIPDSIAKDIE 507
+KT Y + +++R IR +M + ++VT +L+EVV+KLIPDSI KDIE
Sbjct: 149 KKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIE 196
>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
protein Y66D12A.14 protein.
Length = 2870
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -3
Query: 110 TSKTRPFRPSDAIFVPWVRLTRVVPTCLLVNMDG 9
TSK +P R D I V R T CL V G
Sbjct: 2175 TSKAQPIRSDDVISVAGTRSTETTMKCLAVQFTG 2208
>AF016415-8|AAW88415.1| 297|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 32 protein.
Length = 297
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 302 VVLTSMLASISVCHFFTIHLSLSVVRSMPWKLQRTLRPWTSSAISL 165
V + ++ ++ V H F+ H L V +PW T R + AISL
Sbjct: 60 VYIIFVILTMEVPHLFSNHRGLIVTLGLPWSNFATCRSAIALAISL 105
>AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical
protein Y34D9A.1 protein.
Length = 413
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 228 EVHAVEIAENITSLDILSDKSELAE 154
E+H +E AE++ SL +L KSE+ +
Sbjct: 63 EMHIIEPAEHMKSLKVLMQKSEIEQ 87
>L29440-1|AAA98752.1| 570|Caenorhabditis elegans endoprotease
protein.
Length = 570
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 188 RDVMFSAISTAWTSPLINSDGW*RNG 265
RD+ + TA PL N+ GW RNG
Sbjct: 65 RDMQHLVLRTANWKPLENNPGWSRNG 90
>L29439-1|AAA98751.1| 658|Caenorhabditis elegans endoprotease
protein.
Length = 658
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 188 RDVMFSAISTAWTSPLINSDGW*RNG 265
RD+ + TA PL N+ GW RNG
Sbjct: 438 RDMQHLVLRTANWKPLENNPGWSRNG 463
>L29438-1|AAA98750.1| 684|Caenorhabditis elegans endoprotease
protein.
Length = 684
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 188 RDVMFSAISTAWTSPLINSDGW*RNG 265
RD+ + TA PL N+ GW RNG
Sbjct: 438 RDMQHLVLRTANWKPLENNPGWSRNG 463
>AF106575-15|AAC78164.2| 350|Caenorhabditis elegans Serpentine
receptor, class w protein91 protein.
Length = 350
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = -3
Query: 374 HVLRWLSVS----LLVKPMQKTRRTYPSVVLTSMLASISVCHFFTIHLSLS 234
HV WLS+ + + TR+ S + S++ S+++C F ++ +S+S
Sbjct: 36 HVEFWLSIFGGILTIFHFLVLTRKAMKSTSIISLMISVAICDFLSMIVSIS 86
>AF039719-6|AAO12410.1| 666|Caenorhabditis elegans Blistered
cuticle protein 4, isoformf protein.
Length = 666
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 188 RDVMFSAISTAWTSPLINSDGW*RNG 265
RD+ + TA PL N+ GW RNG
Sbjct: 438 RDMQHLVLRTANWKPLENNPGWSRNG 463
>AF039719-5|AAB96755.1| 699|Caenorhabditis elegans Blistered
cuticle protein 4, isoforme protein.
Length = 699
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 188 RDVMFSAISTAWTSPLINSDGW*RNG 265
RD+ + TA PL N+ GW RNG
Sbjct: 438 RDMQHLVLRTANWKPLENNPGWSRNG 463
>AF039719-4|AAB96753.1| 670|Caenorhabditis elegans Blistered
cuticle protein 4, isoforma protein.
Length = 670
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 188 RDVMFSAISTAWTSPLINSDGW*RNG 265
RD+ + TA PL N+ GW RNG
Sbjct: 438 RDMQHLVLRTANWKPLENNPGWSRNG 463
>AF039719-3|AAB96756.1| 730|Caenorhabditis elegans Blistered
cuticle protein 4, isoformb protein.
Length = 730
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 188 RDVMFSAISTAWTSPLINSDGW*RNG 265
RD+ + TA PL N+ GW RNG
Sbjct: 438 RDMQHLVLRTANWKPLENNPGWSRNG 463
>AF039719-2|AAB96757.1| 827|Caenorhabditis elegans Blistered
cuticle protein 4, isoformc protein.
Length = 827
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 188 RDVMFSAISTAWTSPLINSDGW*RNG 265
RD+ + TA PL N+ GW RNG
Sbjct: 438 RDMQHLVLRTANWKPLENNPGWSRNG 463
>AF039719-1|AAB96754.1| 942|Caenorhabditis elegans Blistered
cuticle protein 4, isoformd protein.
Length = 942
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 188 RDVMFSAISTAWTSPLINSDGW*RNG 265
RD+ + TA PL N+ GW RNG
Sbjct: 438 RDMQHLVLRTANWKPLENNPGWSRNG 463
>AC006603-4|AAF39747.2| 379|Caenorhabditis elegans Hypothetical
protein B0524.2 protein.
Length = 379
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 439 VTSSELREVVNKLIPDSIAK 498
V S LR+VV K +PD +AK
Sbjct: 208 VISDRLRKVVEKFLPDDVAK 227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,308,237
Number of Sequences: 27780
Number of extensions: 263704
Number of successful extensions: 752
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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