Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D17
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   0.34 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   5.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   5.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.7  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +1

Query: 151 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANI----DVKTTDGYVL 318
           SFR  R+ A +  GRN    + G      K+   +++  +++  ++    DV   D Y  
Sbjct: 410 SFRISRVAAYNTYGRNAGLRYRGPKQNKPKVLHAIRRGASILRVSMPKIKDVNIIDKYSR 469

Query: 319 RVFCIGF 339
            +F + F
Sbjct: 470 IIFPVSF 476


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 133 DSDAERSFRKFRLIAEDVQGRNVLCN 210
           D  +++  R++RL AED+     + N
Sbjct: 167 DLTSDKLLRQYRLRAEDINMNTFIAN 192


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 375 LRSAYPSPRNQEKNV*NRHARCDQ 446
           LR+     RNQ KNV +R  R D+
Sbjct: 438 LRANVAEGRNQRKNVLDRLFRMDR 461


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/26 (23%), Positives = 16/26 (61%)
 Frame = +1

Query: 214 HGMDLTTDKLRWMVKKWQTLIEANID 291
           +GM +  DK+   + +W+  + +N++
Sbjct: 54  NGMQIWNDKVFITIPRWKNGVPSNLN 79


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 400 RGLGYAERSMSC 365
           +G+GYA   MSC
Sbjct: 60  KGIGYAAAVMSC 71


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 110 SPLLISRLIVMRKGLSASSDLSLRMSRDVMFSAISTA 220
           S  LI+ LIV+      ++D+SL  + D M   I T+
Sbjct: 443 SAALITMLIVLTALGLPTNDISLLFAVDWMLDRIRTS 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,116
Number of Sequences: 438
Number of extensions: 3021
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)