Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D15
         (53 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0381 + 24531622-24532918,24535334-24535468,24535592-245357...    26   4.6  
04_01_0500 - 6540769-6541482,6541819-6541877,6541965-6542064,654...    25   6.1  
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391...    25   8.1  

>05_05_0381 +
           24531622-24532918,24535334-24535468,24535592-24535764,
           24536029-24536239,24536287-24536554,24536664-24536814,
           24536938-24537246
          Length = 847

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 10  NSDEGGLIERWGW 48
           NS  GGL++RW W
Sbjct: 263 NSSGGGLVQRWTW 275


>04_01_0500 -
           6540769-6541482,6541819-6541877,6541965-6542064,
           6542113-6542322,6542507-6542765,6544022-6544215
          Length = 511

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 10  NSDEGGLIERWGW 48
           N DEG  +ERW W
Sbjct: 484 NPDEGNELERWSW 496


>04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,
            3914729-3914823,3914854-3915213
          Length = 1428

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 47   HPHLSIRPPSSELL 6
            HPHL  RPP  E++
Sbjct: 1272 HPHLFTRPPDGEII 1285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,185
Number of Sequences: 37544
Number of extensions: 13902
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 14,793,348
effective HSP length: 0
effective length of database: 14,793,348
effective search space used: 251486916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)