Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D14
(429 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 186 1e-48
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 186 1e-48
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 186 1e-48
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 72 3e-14
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 2.9
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 2.9
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 25 6.6
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 25 6.6
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 24 8.7
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 186 bits (453), Expect = 1e-48
Identities = 90/94 (95%), Positives = 94/94 (100%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQ 397
LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQ
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQ 94
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 186 bits (453), Expect = 1e-48
Identities = 90/94 (95%), Positives = 94/94 (100%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQ 397
LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQ
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQ 94
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 186 bits (453), Expect = 1e-48
Identities = 90/94 (95%), Positives = 94/94 (100%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQ 397
LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQ
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQ 94
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 72.1 bits (169), Expect = 3e-14
Identities = 42/79 (53%), Positives = 56/79 (70%), Gaps = 10/79 (12%)
Frame = +2
Query: 191 ARKSAPSTGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQD--- 349
A+KS + G + +P RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +
Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVA 61
Query: 350 -FKTD--LRFQSAAIGALQ 397
F TD LR+QS A+ LQ
Sbjct: 62 NFSTDVGLRWQSTALQCLQ 80
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 2.9
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 221 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIA 343
+ + HR + +L E + +++ S LLI P Q +RE+A
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELA 548
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 2.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 257 ALREIRRYQKSTELLIRKLPFQR 325
A RE+++ ++ EL++ LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 24.6 bits (51), Expect = 6.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 203 APSTGGVKKPHRYRPGTVALREIRRY 280
APS G K P P T+ + EIRR+
Sbjct: 25 APSGLGWKSPSLAEPFTLPISEIRRF 50
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 24.6 bits (51), Expect = 6.6
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 370 ETKIGFKVLSNFSNESLERQLADQQLRRF 284
+ + GFK + FSNE L+ +L + + +
Sbjct: 606 QQEFGFKYVQEFSNEDLQGKLIEANEKNY 634
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 24.2 bits (50), Expect = 8.7
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 203 APSTGGVKKPHRY--RPGTVALREIRRYQKSTELLIRKLP 316
APS+G + + R +LR++RR ++TE++ +LP
Sbjct: 439 APSSGEANQLYTVCGRGSNSSLRQLRRGLETTEIVASELP 478
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,720,476
Number of Sequences: 5004
Number of extensions: 31899
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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