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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D13
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   221   5e-59
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   221   5e-59
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   221   5e-59
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...   118   4e-28
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...   117   7e-28
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    72   4e-14
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    52   5e-08
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    41   7e-05
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    39   3e-04
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    39   3e-04
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    39   4e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    27   0.078
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    29   0.31 
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    28   0.71 
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    27   1.2  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   1.6  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    27   1.6  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   2.2  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    26   2.9  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    25   5.0  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   5.0  
SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s...    25   6.7  
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun...    24   8.8  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    24   8.8  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    24   8.8  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    24   8.8  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  221 bits (539), Expect = 5e-59
 Identities = 102/109 (93%), Positives = 105/109 (96%)
 Frame = +1

Query: 106 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 285
           MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60

Query: 286 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQA 432
           DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQA
Sbjct: 61  DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQA 109


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  221 bits (539), Expect = 5e-59
 Identities = 102/109 (93%), Positives = 105/109 (96%)
 Frame = +1

Query: 106 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 285
           MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60

Query: 286 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQA 432
           DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQA
Sbjct: 61  DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQA 109


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  221 bits (539), Expect = 5e-59
 Identities = 102/109 (93%), Positives = 105/109 (96%)
 Frame = +1

Query: 106 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 285
           MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1   MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60

Query: 286 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQA 432
           DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQA
Sbjct: 61  DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQA 109


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score =  118 bits (284), Expect = 4e-28
 Identities = 52/105 (49%), Positives = 74/105 (70%)
 Frame = +1

Query: 118 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 297
           K H+NIV IGHVD+GKST  G++++  G +DKRT+EK E+EA+E GK S+  +W LD   
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295

Query: 298 AERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQA 432
            ERE+G T+++    FET     +++DAPGH+ ++ NMI G SQA
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQA 340


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score =  117 bits (282), Expect = 7e-28
 Identities = 53/102 (51%), Positives = 70/102 (68%)
 Frame = +1

Query: 127 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 306
           +++VV GHVDSGKST  G ++++ G I+ R+++K   EA   GKGSF YAW+LD  + ER
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER 237

Query: 307 ERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQA 432
            RG+T+D+A   FE+ K    I DAPGHRDFI  MI G S A
Sbjct: 238 ARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSA 279


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 71.7 bits (168), Expect = 4e-14
 Identities = 42/105 (40%), Positives = 57/105 (54%)
 Frame = +1

Query: 112 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 291
           ++K H+NI  IGHVD GK+T T   I KC                ++G+ SF     +DK
Sbjct: 49  RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93

Query: 292 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTS 426
              E+ RGITI  A  ++ET   +   +D PGH D+IKNMITG +
Sbjct: 94  APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAA 138


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 51.6 bits (118), Expect = 5e-08
 Identities = 32/90 (35%), Positives = 45/90 (50%)
 Frame = +1

Query: 130 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 309
           N+ +I H+D+GK+T T  ++Y  G         F      +  G      V+D L AER+
Sbjct: 30  NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76

Query: 310 RGITIDIALWKFETGKYYVTIIDAPGHRDF 399
           RGITI+ A   F      + +ID PGH DF
Sbjct: 77  RGITINSAAISFTWRNQRINLIDTPGHADF 106


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 41.1 bits (92), Expect = 7e-05
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
 Frame = +1

Query: 130 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 309
           N  VI H+D GKST +  ++   G I++              +  F     LDKL+ ER 
Sbjct: 60  NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103

Query: 310 RGITIDI----ALWKFETGKYYVTIIDAPGHRDF 399
           RGIT+       ++ +    Y + +ID PGH DF
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDF 137


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
 Frame = +1

Query: 106 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 276
           MGK     N+ VI HVD GKST T  L+ K G I   K    +F +  A E  +G    +
Sbjct: 13  MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72

Query: 277 WVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDF 399
             +  L AE       D+      T  + V +ID+PGH DF
Sbjct: 73  TAIS-LFAEMTDDDMKDMKEPADGTD-FLVNLIDSPGHVDF 111


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
 Frame = +1

Query: 106 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 276
           MGK     N+ VI HVD GKST T  L+ K G I   K    +F +  A E  +G    +
Sbjct: 13  MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72

Query: 277 WVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDF 399
             +  L AE       D+      T  + V +ID+PGH DF
Sbjct: 73  TAIS-LFAEMTDDDMKDMKEPADGTD-FLVNLIDSPGHVDF 111


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 38.7 bits (86), Expect = 4e-04
 Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
 Frame = +1

Query: 130 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 309
           NI +  H+DSGK+T T  ++Y  G I         K+  E+ +G       +D ++ ERE
Sbjct: 61  NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110

Query: 310 RGITIDIA----LWK---------------FETGKYYVTIIDAPGHRDF 399
           +GITI  A     W+               FE   Y + IID PGH DF
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEK-SYNINIIDTPGHIDF 158


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 27.5 bits (58), Expect(2) = 0.078
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 253 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETGKYYVTIIDAPGHRDF 399
           GK +   A+    + +    GIT  I  +   F+ G  ++T +D PGH  F
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAF 233



 Score = 22.2 bits (45), Expect(2) = 0.078
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 133 IVVIGHVDSGKST 171
           + ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = +1

Query: 286 DKLKAER-ERGITIDIALWKFETGKYYV--TIIDAPGHRDFIKN 408
           +K++A+  E+ + I+I   + E   +++  T+ID PG  DFI N
Sbjct: 60  EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
 Frame = +1

Query: 130 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKG----SFKYAWVLD 288
           N  ++ HVD GK+T    L+   G I  +   T+   +    E+ +G    S   +    
Sbjct: 21  NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFK 80

Query: 289 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDF 399
            +    E+ +  D          Y + +ID+PGH DF
Sbjct: 81  VISQNDEKRVEKD----------YLINLIDSPGHVDF 107


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 317 IPRSRSAFSLSNTQAYLKEPLPISWASFSNFSMVRLSIPPH 195
           IP+   A S+ N++ + ++ LP  +   S    V+L +P H
Sbjct: 173 IPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
 Frame = +1

Query: 139 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKAERER 312
           ++GHVD+GK+    +L        +  +++ E     Q++G   F    +  K K   ++
Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541

Query: 313 GITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTS 426
           G        K +     + IID PGH  F      GTS
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTS 571


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +1

Query: 262 SFK-YAWVLDKLKA-ERERGITID-IALWKFETGKYYVTIIDAPGHRDFIKNMIT 417
           +FK Y   L+ LK  E++ G++ID +    F+ G  +   +  PG+ DF+ N ++
Sbjct: 3   AFKPYTEALEVLKKYEKKDGLSIDDLIRHNFQGGLTFNDFLILPGYIDFVPNNVS 57


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 197 AVVSTNVPSKSSRRKPRKWVRVPS 268
           A++S  +  K +  +P KWV VPS
Sbjct: 224 ALISNGLKVKETSEEPEKWVVVPS 247


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 347 SNFQRAISMVIPRSRSAFSLSNTQAYLKEPLPISWASFSNFSMV 216
           S F   IS+ +P     FSL+ ++   K  LPI W S  + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 100 PKMGKEKVHINIVVIGHVDSGKST 171
           P +   +  INI  IGHV  GKST
Sbjct: 15  PAIISRQATINIGTIGHVAHGKST 38


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +3

Query: 318 HHRY-CSLEVRNRQILCHHH 374
           HH++ C L V+N+++  H H
Sbjct: 196 HHKFFCDLCVKNKKVFTHEH 215


>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
           subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 338 QRAISMVIPRSRSAFSLSNTQAYLKEPLPISWASFSN 228
           Q A+S +IP++RSA    N    LK  L  S+  + N
Sbjct: 33  QAAVSQLIPQARSAIQTGNALQGLKTLL--SYVPYGN 67


>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
           Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 414 DHVLDEISVSRSVDDGDIVFAGFELP 337
           DH L  +  ++ + D  ++FAG+++P
Sbjct: 38  DHTLANMLANQLLSDERVLFAGYKVP 63


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 133 IVVIGHVDSGKSTTTGHLIYKC 198
           IVV+G   SGKST     + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 136 VVIGHVDSGKSTTTGHLIYKCG 201
           +V+GH   GK+T     +Y+ G
Sbjct: 45  IVLGHTGCGKTTQIPQFLYEAG 66


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 384 WTQRFHQEHDHWN 422
           W Q F Q+H +WN
Sbjct: 258 WQQSFLQDHGYWN 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,139
Number of Sequences: 5004
Number of extensions: 34424
Number of successful extensions: 142
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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