Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D13
(434 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 232 9e-62
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 232 9e-62
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 232 9e-62
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 232 9e-62
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 140 4e-34
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 137 4e-33
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 137 4e-33
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 123 5e-29
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 64 3e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 64 3e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 64 3e-11
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 61 4e-10
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 61 4e-10
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 54 3e-08
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 50 6e-07
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 48 2e-06
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 38 0.002
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 38 0.002
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 33 0.12
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 33 0.12
Z69904-1|CAA93777.1| 420|Caenorhabditis elegans Hypothetical pr... 30 0.83
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.1
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 1.1
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 29 1.1
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 29 1.1
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 24 1.8
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 28 3.4
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 28 3.4
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 27 5.9
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 27 5.9
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 27 5.9
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 27 5.9
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 27 7.8
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 27 7.8
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 232 bits (567), Expect = 9e-62
Identities = 107/109 (98%), Positives = 108/109 (99%)
Frame = +1
Query: 106 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 285
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 286 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQA 432
DKLKAERERGITIDIALWKFET KYY+TIIDAPGHRDFIKNMITGTSQA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 232 bits (567), Expect = 9e-62
Identities = 107/109 (98%), Positives = 108/109 (99%)
Frame = +1
Query: 106 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 285
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 286 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQA 432
DKLKAERERGITIDIALWKFET KYY+TIIDAPGHRDFIKNMITGTSQA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 232 bits (567), Expect = 9e-62
Identities = 107/109 (98%), Positives = 108/109 (99%)
Frame = +1
Query: 106 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 285
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 286 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQA 432
DKLKAERERGITIDIALWKFET KYY+TIIDAPGHRDFIKNMITGTSQA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 232 bits (567), Expect = 9e-62
Identities = 107/109 (98%), Positives = 108/109 (99%)
Frame = +1
Query: 106 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 285
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 286 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQA 432
DKLKAERERGITIDIALWKFET KYY+TIIDAPGHRDFIKNMITGTSQA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 140 bits (339), Expect = 4e-34
Identities = 64/67 (95%), Positives = 65/67 (97%)
Frame = +1
Query: 106 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 285
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 286 DKLKAER 306
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 137 bits (331), Expect = 4e-33
Identities = 61/106 (57%), Positives = 79/106 (74%)
Frame = +1
Query: 115 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 294
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 295 KAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQA 432
+ ERERG+T+DI FET + ++DAPGH+DFI NMITGTSQA
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQA 272
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 137 bits (331), Expect = 4e-33
Identities = 61/106 (57%), Positives = 79/106 (74%)
Frame = +1
Query: 115 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 294
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 295 KAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQA 432
+ ERERG+T+DI FET + ++DAPGH+DFI NMITGTSQA
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQA 290
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 123 bits (297), Expect = 5e-29
Identities = 54/108 (50%), Positives = 77/108 (71%)
Frame = +1
Query: 109 GKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 288
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 289 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQA 432
ERE+G T+++ FET K + TI+DAPGH+ F+ NMI G +QA
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQA 211
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 64.5 bits (150), Expect = 3e-11
Identities = 38/106 (35%), Positives = 53/106 (50%)
Frame = +1
Query: 112 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 291
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 89
Query: 292 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQ 429
E+ RGITI+ ++ET K + ID PGH D+IKNMITG +Q
Sbjct: 90 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQ 135
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 64.5 bits (150), Expect = 3e-11
Identities = 38/106 (35%), Positives = 53/106 (50%)
Frame = +1
Query: 112 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 291
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 292 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQ 429
E+ RGITI+ ++ET K + ID PGH D+IKNMITG +Q
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQ 136
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 64.5 bits (150), Expect = 3e-11
Identities = 38/106 (35%), Positives = 53/106 (50%)
Frame = +1
Query: 112 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 291
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 292 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQ 429
E+ RGITI+ ++ET K + ID PGH D+IKNMITG +Q
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQ 136
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 60.9 bits (141), Expect = 4e-10
Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Frame = +1
Query: 118 KVHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 291
K+++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 292 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQ 429
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQ 131
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 60.9 bits (141), Expect = 4e-10
Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Frame = +1
Query: 118 KVHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 291
K+++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 292 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQ 429
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQ 131
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 54.4 bits (125), Expect = 3e-08
Identities = 36/90 (40%), Positives = 46/90 (51%)
Frame = +1
Query: 130 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 309
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERE 73
Query: 310 RGITIDIALWKFETGKYYVTIIDAPGHRDF 399
RGIT+ A + + + +ID PGH DF
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDF 103
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 50.4 bits (115), Expect = 6e-07
Identities = 32/90 (35%), Positives = 44/90 (48%)
Frame = +1
Query: 130 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 309
NI + H+DSGK+T T ++Y G ID E+ +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSM---------HEV-RGKDDVGATMDFMDLERQ 95
Query: 310 RGITIDIALWKFETGKYYVTIIDAPGHRDF 399
RGITI A + + IID PGH DF
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDF 125
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 48.4 bits (110), Expect = 2e-06
Identities = 31/90 (34%), Positives = 42/90 (46%)
Frame = +1
Query: 130 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 309
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 310 RGITIDIALWKFETGKYYVTIIDAPGHRDF 399
RGIT+ Y + +ID PGH DF
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDF 115
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 38.3 bits (85), Expect = 0.002
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Frame = +1
Query: 130 NIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGKGSFKYAWV 282
N+ VI HVD GKST T L+ K G I K +F K+ QE + + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISLFFE 80
Query: 283 LDKLKAERERG----ITIDIALWKFETGKYYVTIIDAPGHRDF 399
L+K E +G T+++ K + + + +ID+PGH DF
Sbjct: 81 LEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDF 123
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 38.3 bits (85), Expect = 0.002
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Frame = +1
Query: 130 NIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGKGSFKYAWV 282
N+ VI HVD GKST T L+ K G I K +F K+ QE + + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISLFFE 80
Query: 283 LDKLKAERERG----ITIDIALWKFETGKYYVTIIDAPGHRDF 399
L+K E +G T+++ K + + + +ID+PGH DF
Sbjct: 81 LEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDF 123
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 32.7 bits (71), Expect = 0.12
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +1
Query: 112 KEKVHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 288
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRM------------AGKLRY---MD 59
Query: 289 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDF 399
+ E+ RGIT+ + + +ID+PGH DF
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDF 96
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 32.7 bits (71), Expect = 0.12
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +1
Query: 112 KEKVHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 288
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRM------------AGKLRY---MD 59
Query: 289 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDF 399
+ E+ RGIT+ + + +ID+PGH DF
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDF 96
>Z69904-1|CAA93777.1| 420|Caenorhabditis elegans Hypothetical
protein ZK20.1 protein.
Length = 420
Score = 29.9 bits (64), Expect = 0.83
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 384 RSVDDGDIVFAGFELPESNIDGDTTLTLGL 295
R ++DGDIV + F+ P I D T++L L
Sbjct: 260 RFIEDGDIVSSFFDRPSIRIQSDNTVSLRL 289
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 208 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 309
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 208 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 309
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 100 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY 192
P K+ + + V+G+VD+GKST G L +
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 100 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY 192
P K+ + + V+G+VD+GKST G L +
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 24.2 bits (50), Expect(2) = 1.8
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +1
Query: 253 GKGSFKYAWVLDKLKAERERGITIDIALWKFETGK-YYVTIIDAPGHRDFIKNMITGTSQ 429
GK + A ++ A GIT I + E K VT +D PGH F G
Sbjct: 168 GKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKG 227
Query: 430 A 432
A
Sbjct: 228 A 228
Score = 23.0 bits (47), Expect(2) = 1.8
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 133 IVVIGHVDSGKST 171
+ ++GHVD GK+T
Sbjct: 159 VTIMGHVDHGKTT 171
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 127 INIVVIGHVDSGKSTTT 177
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 127 INIVVIGHVDSGKSTTT 177
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 277 WVLDKLKAERERGITIDIALWKFETGKYYVTII 375
W+++KL R +T W ++ G YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 337 WKFETGKYY-VTIIDAPGHRDFI--KNMITGTSQA 432
++ E G+ V IID+ G RDFI KN+ GT+ A
Sbjct: 63 YEIEEGRVLMVQIIDSSGSRDFIGMKNLYIGTADA 97
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 277 WVLDKLKAERERGITIDIALWKFETGKYYVTII 375
W+++KL R +T W ++ G YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 277 WVLDKLKAERERGITIDIALWKFETGKYYVTII 375
W+++KL R +T W ++ G YVT I
Sbjct: 1443 WLIEKLVTRRNLTVTSPRQPWYYQQGSQYVTTI 1475
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 100 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 258
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 100 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 258
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 27.1 bits (57), Expect = 5.9
Identities = 22/94 (23%), Positives = 39/94 (41%)
Frame = +1
Query: 130 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 309
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 134 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 184
Query: 310 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNM 411
+ + I + Y + IID PGH +F M
Sbjct: 185 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEM 218
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 27.1 bits (57), Expect = 5.9
Identities = 22/94 (23%), Positives = 39/94 (41%)
Frame = +1
Query: 130 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 309
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 9 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 59
Query: 310 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNM 411
+ + I + Y + IID PGH +F M
Sbjct: 60 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEM 93
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 100 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 258
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 89 LLDSLFHFTKLFLQTLTTD 33
L SL HF+K+ +QT+TTD
Sbjct: 1683 LAASLTHFSKMNIQTMTTD 1701
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 89 LLDSLFHFTKLFLQTLTTD 33
L SL HF+K+ +QT+TTD
Sbjct: 1683 LAASLTHFSKMNIQTMTTD 1701
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,777,082
Number of Sequences: 27780
Number of extensions: 193379
Number of successful extensions: 687
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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