Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D12
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    26   1.5  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   1.5  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   3.6  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   4.7  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    24   6.3  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    23   8.3  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    23   8.3  

>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 211 SKTGVTGPYTFGVGLTTYLFSKEIYVMEHEYY 306
           +KT +  PY   VG  T LFS  IY++   Y+
Sbjct: 483 NKTTLNTPYANAVGNFTGLFSGLIYIVLISYF 514


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
 Frame = -3

Query: 229 QLHQSLSG-----RTGTILQE*IRVSLY---QGSVSLTGLGKFCLITYTSNICGGASGNK 74
           +LH S+S      + G + +  I +S Y   +GSV + G  K  L++   N+     G+ 
Sbjct: 249 ELHWSMSRLLACIKNGEVHKGLINISTYNYLEGSVVVPGYNKPVLVSGRENLNRAVQGDI 308

Query: 73  CCVRGLLPQ 47
            C++ +LPQ
Sbjct: 309 VCIQ-ILPQ 316


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 161 PRFSEPDWSWEVLSHHVHQQHLWW 90
           PRFS+  W W V+S  + Q  L++
Sbjct: 96  PRFSKTPWDWIVISSILAQVLLFF 119


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 4  VNYA*KCYHA*LTSAAATVPVHST 75
          +++A K Y+A LT+AAA+  +H T
Sbjct: 1  MSHASKNYNAQLTAAAASTALHGT 24


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 206 KNWNHSSGMNPSLTLPRFSEPDWSWEVLSHHVHQQHLW 93
           K +   S  N  L    + +  WSW  LSH   ++ L+
Sbjct: 423 KGYQFDSQKNSELVSDLYLKDLWSWIHLSHRQSEESLF 460


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 209 WKNWNHSSGMNPSLTLPR 156
           WKN N  S  +PSL L R
Sbjct: 251 WKNINEESSEDPSLLLLR 268


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 246 RRPHDVPIQQGDIRH 290
           ++  D+ IQQ DIRH
Sbjct: 541 KKAEDIAIQQSDIRH 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,334,111
Number of Sequences: 5004
Number of extensions: 25825
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)