Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D12
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632... 29 0.77
02_01_0079 + 554635-556098 29 0.77
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225... 27 4.1
05_05_0303 - 23958989-23960563,23962628-23962864,23963250-239634... 27 4.1
09_04_0717 + 19706160-19706327,19707036-19707157,19707408-197075... 26 5.4
12_02_0155 + 14497847-14498012,14499612-14499695,14500196-14500551 26 7.1
03_01_0056 - 471338-471919,472013-472213 26 7.1
07_03_0082 - 13222635-13223350,13223368-13223928,13224095-132248... 25 9.4
03_02_0764 + 10990220-10992410,10992809-10993616,10994734-109949... 25 9.4
01_05_0127 - 18401461-18401464,18401868-18403876,18404060-184042... 25 9.4
>06_03_0640 -
23059473-23060489,23060592-23060651,23063163-23063283,
23063476-23065496
Length = 1072
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 12 RIKMLSRVAYVSCGNSPRTQHLLPEAPPQM 101
+++ML V + S G+ Q LLP+A PQ+
Sbjct: 120 KVQMLKSVPFRSAGSKRPAQELLPKAQPQL 149
>02_01_0079 + 554635-556098
Length = 487
Score = 29.1 bits (62), Expect = 0.77
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 279 LLAE*VRREADAKCVGTSYTSL*VEELEP 193
L+AE RR D +C GTS+T L EL P
Sbjct: 458 LVAELFRRYDDFECDGTSFTKLDKRELTP 486
>07_03_0961 -
22921761-22921850,22922204-22922338,22922409-22922531,
22922621-22922707,22922780-22922831,22922939-22923063,
22923724-22923932,22924206-22924407,22924526-22924630,
22925353-22925414,22925755-22925944,22926017-22926112,
22926203-22926305,22927019-22927122,22927264-22927395,
22928257-22928343,22929121-22929206,22929291-22929383,
22932197-22932284,22932402-22932514,22932621-22932743,
22934153-22934204,22934365-22934408,22934498-22934571,
22934655-22934746,22935594-22935661,22937146-22937221,
22937323-22937679
Length = 1055
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 69 QHLLPEAPPQMLLVYVMRQNFPRPVRLTEPW*SETRIHS*RMVPVLPLKDWCN 227
Q +L + P + ++ + F LTEPW + +S VP +++W N
Sbjct: 518 QSILNDLTPDKVRIFWESKKFEGQTNLTEPWYGTS--YSVEAVPPSIIQNWVN 568
>05_05_0303 -
23958989-23960563,23962628-23962864,23963250-23963449,
23964088-23964250,23964348-23964554,23964667-23964798
Length = 837
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 234 LHIWRRPHDVPIQQGD 281
LH WR P D P +Q D
Sbjct: 705 LHTWRNPFDHPFEQSD 720
>09_04_0717 +
19706160-19706327,19707036-19707157,19707408-19707510,
19707644-19707734,19707960-19708132,19708534-19708622,
19708995-19709085,19709272-19709361,19709807-19709854,
19710033-19710104,19710181-19710274,19710350-19710494,
19710809-19710951,19711601-19711751,19712276-19712449,
19712799-19712874
Length = 609
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 142 SGSLNLGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLTTYLFSKEIYVMEHEYYTGL 315
S + + + +L FIPE W Q + + Y +G L S ++ E +GL
Sbjct: 330 SDVVGIPETQLKFIPEAWSQIIECRRVLKWTYAYGYYLHNKAKSDFFVYLQGEAESGL 387
>12_02_0155 + 14497847-14498012,14499612-14499695,14500196-14500551
Length = 201
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = -3
Query: 133 GKFCLITYTSNICGGASGNK---CCVRGLLPQ 47
G C I+ T + CG +G + CC+ +P+
Sbjct: 157 GPACAISRTGSSCGAGNGEQWSHCCIPSFVPR 188
>03_01_0056 - 471338-471919,472013-472213
Length = 260
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 202 FFHSKTGVTGPYTFGVGLTTYLFSKEIYVMEHE 300
+F + V YT GV YL + E+Y +H+
Sbjct: 47 YFGASIKVPSGYTAGVNTAFYLSNNELYPGQHD 79
>07_03_0082 -
13222635-13223350,13223368-13223928,13224095-13224839,
13226548-13226638,13227330-13227342,13227633-13227689,
13229170-13229260,13229444-13229476,13229588-13230085
Length = 934
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -2
Query: 176 PSLTLPRFSEPDWSWEV-LSHHVHQQHLWWSFW 81
P+ ++ P WS + L H+H H W FW
Sbjct: 131 PAASVDPRRPPSWSKVLALRAHLHLHHHHWLFW 163
>03_02_0764 +
10990220-10992410,10992809-10993616,10994734-10994968,
10995028-10995169,10997365-10997444,10997636-10997776
Length = 1198
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 96 VVELLAISAVYGDCCRS*RKLRVIAFLCVIHH 1
VV L + V+G+CCR + F+ V+H+
Sbjct: 837 VVGKLLVGEVFGNCCRLKGPDALTKFMIVLHN 868
>01_05_0127 -
18401461-18401464,18401868-18403876,18404060-18404237,
18404381-18404958,18405609-18405611
Length = 923
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 9 LRIKMLSRVAYVSCGNSPRTQHLLPEAPPQMLL 107
++++ L R+ + C N R + + P PP LL
Sbjct: 489 MQVQQLERLFLLGCANLTRVKWIDPSNPPLKLL 521
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,820,349
Number of Sequences: 37544
Number of extensions: 175164
Number of successful extensions: 474
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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