Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D12
         (315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-8|CAA86329.1|  301|Caenorhabditis elegans Hypothetical pr...    48   1e-06
U53340-6|AAA96210.1|  305|Caenorhabditis elegans Atp synthase b ...    48   1e-06
AC024201-18|AAF36026.1|  430|Caenorhabditis elegans Hypothetical...    27   2.1  
U23519-8|AAK31503.3|  734|Caenorhabditis elegans Hypothetical pr...    27   2.8  
U40952-6|AAA81740.3|  328|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical p...    26   5.0  
U50191-6|AAK31554.2|  235|Caenorhabditis elegans Hypothetical pr...    26   5.0  
Z81554-2|CAB04504.1|  259|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    26   6.6  
AF067219-3|AAC17027.1|   74|Caenorhabditis elegans Hypothetical ...    25   8.7  

>Z46242-8|CAA86329.1|  301|Caenorhabditis elegans Hypothetical
           protein F35G12.10 protein.
          Length = 301

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 20/46 (43%), Positives = 28/46 (60%)
 Frame = +1

Query: 163 KVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLTTYLFSKEIYVMEHE 300
           K RL  +P+ WF  F   TG +GPY F  GL  +L +KE++V E +
Sbjct: 104 KTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQ 149


>U53340-6|AAA96210.1|  305|Caenorhabditis elegans Atp synthase b
           homolog protein 2 protein.
          Length = 305

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 21/46 (45%), Positives = 29/46 (63%)
 Frame = +1

Query: 163 KVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLTTYLFSKEIYVMEHE 300
           K RL  +P+ WF  F   TGV+GPY F  GL  +L +KE++V E +
Sbjct: 106 KSRLLMMPDSWFTPFQKVTGVSGPYLFFGGLFAFLVNKELWVFEEQ 151


>AC024201-18|AAF36026.1|  430|Caenorhabditis elegans Hypothetical
           protein Y71F9B.14 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 256 TTYLFSKEIYVMEHEYYTG 312
           TT LF K+IY    EYY G
Sbjct: 50  TTVLFKKDIYTSTTEYYNG 68


>U23519-8|AAK31503.3|  734|Caenorhabditis elegans Hypothetical
           protein F26G1.6 protein.
          Length = 734

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 176 PSLTLPRFSEPDWSWEVLSHHV 111
           P LT  RF   D+ WEVL+ H+
Sbjct: 203 PLLTNARFDSIDFQWEVLAGHL 224


>U40952-6|AAA81740.3|  328|Caenorhabditis elegans Hypothetical
           protein C03B1.5 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 244 QMCRDQLHQSLSGRTGTILQE*IRVSLYQGSVSLTGLG 131
           +  R   +QS+ G  G I  E I +  Y G   L GLG
Sbjct: 181 EQTRKSKNQSILGTPGFIAPEIINLQGYDGKADLWGLG 218


>Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical
           protein R107.6 protein.
          Length = 1020

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 143 DWSWEVLSHHVHQQHL 96
           DW+++VL  H H QH+
Sbjct: 675 DWAYKVLQSHGHDQHV 690


>U50191-6|AAK31554.2|  235|Caenorhabditis elegans Hypothetical
           protein T14B4.8 protein.
          Length = 235

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 182 MNPSLTLPRFSEPDWSWEVLSHH 114
           + P  T+P FS  DW+ EVL ++
Sbjct: 125 LRPRRTVPTFSIIDWNGEVLGYY 147


>Z81554-2|CAB04504.1|  259|Caenorhabditis elegans Hypothetical
           protein F57G4.5 protein.
          Length = 259

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +2

Query: 26  ITRSLRQLRQQSPYTALIARSSTTDVAGVRDETELPKTSQAH*TLVK*DSDSFLKNGSSS 205
           ++R +R+ RQ+S Y      S+    +  R   +LP +      + + DS+S +   SSS
Sbjct: 60  VSRRIRKARQKSHYFNSNQYSAENLSSSARKSAKLPNSRSMQDYMCRADSES-ISTSSSS 118

Query: 206 STQ 214
           + Q
Sbjct: 119 ALQ 121


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 232 DQLHQSLSGRTGTILQE*IRVSLYQGSVSLTGL 134
           D+LH    G  G IL++ +   LY+G+  + G+
Sbjct: 295 DELHMIGDGGRGAILEQLLAKFLYKGTGQIVGM 327


>AF067219-3|AAC17027.1|   74|Caenorhabditis elegans Hypothetical
           protein R12E2.6 protein.
          Length = 74

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 127 FCLITYTSNICGGASGNKCC 68
           F  + Y S   GGA+ N CC
Sbjct: 8   FTFVAYASACFGGATQNSCC 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,383,506
Number of Sequences: 27780
Number of extensions: 142141
Number of successful extensions: 365
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)