Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D11
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 162 2e-41
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 158 4e-40
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 1.3
SPAC664.08c |||traub transciption factor family protein |Schizos... 27 1.7
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 6.8
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 25 6.8
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 9.0
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 24 9.0
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 24 9.0
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 162 bits (394), Expect = 2e-41
Identities = 74/125 (59%), Positives = 97/125 (77%)
Frame = +2
Query: 65 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 244
+VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77
Query: 245 ERSFRKFRLIAEDVQERNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTSDGYVLRV 424
E SFRK +L ED+Q ++ L +F+G D+T+DKLR +V+KWQ+ IEAN +KT+DGY+ R+
Sbjct: 78 EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRI 137
Query: 425 FCIGF 439
F IGF
Sbjct: 138 FVIGF 142
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 158 bits (383), Expect = 4e-40
Identities = 72/125 (57%), Positives = 97/125 (77%)
Frame = +2
Query: 65 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 244
+VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77
Query: 245 ERSFRKFRLIAEDVQERNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTSDGYVLRV 424
E +FRK +L ED+Q ++ L +F+G+ +T+DKLR +V+KWQT IEA+ +KT+DGY+ RV
Sbjct: 78 EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRV 137
Query: 425 FCIGF 439
F IGF
Sbjct: 138 FVIGF 142
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 27.1 bits (57), Expect = 1.3
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 200 VFEVSLADLQADSDAERSFRKFRLIAEDVQERNVLCNFHGMDLTTDKLRWMV--KKWQTL 373
VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 374 IEANIDVKTS 403
+E + D++T+
Sbjct: 144 LETSKDLETT 153
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 1.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 323 DLTTD-KLRWMVKKWQTLIEANIDVKTSDGYVLR 421
D T D +RWM K Q + N+D K S G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 6.8
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 145 PCQSHPGNKNCI*GSKGACF 204
PC H K C G GACF
Sbjct: 347 PCGEHTCKKRCHSGLCGACF 366
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 24.6 bits (51), Expect = 6.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 325 VHAVEIAENITFLDILSDKSELAERPFRI 239
VH++ + +IL+D S L RPF +
Sbjct: 36 VHSISKERRDSLTEILNDSSSLPARPFSL 64
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.2 bits (50), Expect = 9.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 173 IASEGLKGRVFEVSLADLQADSDAERSFRKFR 268
+ S GR + +AD DSD+ERS+R+ R
Sbjct: 351 VGSSSSHGRQQDSYIAD---DSDSERSYRRVR 379
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 24.2 bits (50), Expect = 9.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 186 PSDAIFVPWVRLTRVVPTCLLVNMDGALTSYQ 91
PSD+ F W +L R+V + + + LT YQ
Sbjct: 1905 PSDSTFPLWAKLPRLVISEDVQGISQPLTVYQ 1936
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 379 FNQCLPFLYHPSEFISGEV 323
FNQ + FL HP F S V
Sbjct: 410 FNQLIDFLKHPHGFTSSSV 428
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,947
Number of Sequences: 5004
Number of extensions: 36061
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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