Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D11
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 193 6e-50
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 191 2e-49
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 191 2e-49
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 29 2.2
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 27 6.7
02_01_0455 + 3266123-3266258,3266348-3266670,3267083-3267661,326... 27 8.8
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267 27 8.8
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 193 bits (470), Expect = 6e-50
Identities = 91/124 (73%), Positives = 106/124 (85%)
Frame = +2
Query: 68 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 247
VDPF +KDWYD+KAPS+F R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 248 RSFRKFRLIAEDVQERNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTSDGYVLRVF 427
+++RK RL AEDVQ +NVL NF GM TTDKLR +VKKWQTLIEA++DVKT+DGY+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 428 CIGF 439
CIGF
Sbjct: 139 CIGF 142
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 191 bits (465), Expect = 2e-49
Identities = 91/124 (73%), Positives = 105/124 (84%)
Frame = +2
Query: 68 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 247
VDPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 248 RSFRKFRLIAEDVQERNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTSDGYVLRVF 427
+++RK RL AEDVQ +NVL NF GM TTDKLR +VKKWQTLIEA++DVKT+D Y+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 428 CIGF 439
CIGF
Sbjct: 139 CIGF 142
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 191 bits (465), Expect = 2e-49
Identities = 90/124 (72%), Positives = 107/124 (86%)
Frame = +2
Query: 68 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 247
VDPF++KDWYD+KAP++F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 248 RSFRKFRLIAEDVQERNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTSDGYVLRVF 427
+++RK RL AEDVQ RNVL NF GM TTDKLR +VKKWQTLIEA++DVKT+D Y+LR+F
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 428 CIGF 439
CIGF
Sbjct: 139 CIGF 142
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 93 GTMLKRRPCSPRDKWAPPLSIAP 161
G + R PC PRDK+ P S+ P
Sbjct: 206 GAYIVRLPCGPRDKYLPKESLWP 228
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 140 TTLVNRTQGTKIASEGLKGRVFEV 211
TT+VN + K+A EG+KG ++V
Sbjct: 17 TTIVNLAEEAKLAREGVKGPGYQV 40
>02_01_0455 +
3266123-3266258,3266348-3266670,3267083-3267661,
3267866-3268336
Length = 502
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 171 KLHLRV*RGVFLR-SPLLISRLIVMRKGLSASSDLSLRMSRNVMFSAISTAWTSPLINSD 347
+L L V GV + SPL IS + ++ + L ++ ++ ++++T WTS +
Sbjct: 141 RLLLGVGVGVCIHASPLYISEMAPAQQRGMLNILFQLMITVGILSASLTTYWTSKIAGGW 200
Query: 348 GW 353
GW
Sbjct: 201 GW 202
>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
Length = 769
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 248 FPHHYQPGDQQGRPQKHAPLDPQMQFLFPG 159
+P+ P D P++H PLD +Q + G
Sbjct: 386 YPYVSNPEDPNHEPRQHEPLDSDVQVIDEG 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,303,850
Number of Sequences: 37544
Number of extensions: 261325
Number of successful extensions: 672
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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