Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D11
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   0.85 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   3.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   6.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -3

Query: 352 HPSEFISG-EVHAVEI-AENITFLDILSDKSELAERPFRITISLEISKGDLKNTPL 191
           +PS+   G +++A  I  ENI FLD+ + K E+     + T S  ++K    N P+
Sbjct: 795 YPSQTTHGYDIYASSIDKENILFLDLSTGKVEMITGVGKAT-SPNLTKWGNPNRPI 849


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 233 DSDAERSFRKFRLIAEDVQERNVLCN 310
           D  +++  R++RL AED+     + N
Sbjct: 167 DLTSDKLLRQYRLRAEDINMNTFIAN 192


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 281 DVQERNVLCNFHGMDLTTDKLRWMVKKWQTLIEANID 391
           D  E N + N  GM +  DK+   + +W+  + +N++
Sbjct: 45  DYIEENNMPN--GMQIWNDKVFITIPRWKNGVPSNLN 79


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 115 HVHQETSGHHPCQSHP 162
           H HQ    HHP Q HP
Sbjct: 317 HPHQ----HHPSQYHP 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,470
Number of Sequences: 438
Number of extensions: 2513
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)