Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D10
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    30   0.10 
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    26   1.7  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   1.7  
SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces pombe...    25   3.9  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   3.9  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    24   5.2  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    24   6.8  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    24   6.8  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    23   9.0  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 29.9 bits (64), Expect = 0.10
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -3

Query: 268 YREQNIHLHHWCNYHDQKRNCRYHNDCYHQNYSRDRY*N*SHGHHQIHRH 119
           +  +N   HH  + H+     +Y+  C H++ S     N  H HH    H
Sbjct: 532 HTHENSQEHHHEHNHNHDHIHKYNEKCDHESISLQNLDNDHHCHHHHENH 581


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 136 HQIHRHAHLGYHHVRLRNLLH 74
           +++++H+HLGY     R L+H
Sbjct: 321 YELYQHSHLGYGLKEARKLIH 341


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 241 HWCNYHDQKRNCRYHNDCYHQNYSRDRY*N*SHGHHQIHRHAHLGYHH 98
           H  +  + K++    +  +H N+  D+  +   GHH  H H H  +HH
Sbjct: 266 HESSNSNLKKSSESGSTNHHNNHESDKDLH-HEGHHHHHHHHH--HHH 310


>SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 106 YHHVRLRNLLHI 71
           YHH R++N LH+
Sbjct: 100 YHHYRIKNFLHL 111


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -3

Query: 289 HDRLYCSY--REQNIHLHHWCNYHD 221
           HDRL C Y  R   +H   + ++HD
Sbjct: 359 HDRLVCRYENRYNKLHASEYNHHHD 383


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 96  SASEICSISSFMTAIVATTESTKTTI 19
           S S + SIS++ ++I  T + TKT++
Sbjct: 807 SVSSVSSISTYSSSIELTPQITKTSL 832


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 295 GYHDRLYCSYREQNIHLHHWCNYHDQKR 212
           G   +L+ +Y E +I  H W  +H +++
Sbjct: 131 GIPPKLFDTYEENSIMNHCWVFFHSEQK 158


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 133  QIHRHAHLGYHHVRLRNLLHILLYDRYC 50
            Q      LG+ +V LR+++H+L  + +C
Sbjct: 1114 QSSNEMELGHVYVALRSVIHLLPNELFC 1141


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 145 HGHHQIHRHAHLGYH 101
           H HH I  H + GYH
Sbjct: 746 HHHHYITGHVYGGYH 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 950,878
Number of Sequences: 5004
Number of extensions: 15200
Number of successful extensions: 34
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)