Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_D10
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0707 - 20212190-20214592 33 0.041
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 29 0.67
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362... 29 0.89
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 28 1.5
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 27 2.7
11_06_0247 - 21669299-21669348,21669673-21670012,21670110-216701... 27 4.7
03_04_0174 - 18044516-18046327 27 4.7
01_06_1815 - 40064351-40064887,40064987-40065634,40065834-400658... 27 4.7
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 26 6.2
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 26 6.2
01_06_0671 - 31076463-31076610,31077060-31077202,31077758-310779... 26 6.2
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 26 8.3
10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841 26 8.3
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 26 8.3
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544... 26 8.3
>08_02_0707 - 20212190-20214592
Length = 800
Score = 33.5 bits (73), Expect = 0.041
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Frame = -3
Query: 328 HSDHSFPSLLHGYHDRLYCSYREQNIHLHHWCNYHDQKRNCRYHNDCYHQNYSRDRY*N- 152
HS S +HG+ D + Q ++ + C H N +H+D +H + + + + N
Sbjct: 508 HSHSHSHSHVHGHEDHHNHDHALQGVNHNGACCEHHGDANKSHHHDHHHDSSNEESHHNS 567
Query: 151 -----*SHGHHQIHRHAHLGYHH 98
H H H H +HH
Sbjct: 568 LTENSCKENHSHCHGHDHHHHHH 590
Score = 33.1 bits (72), Expect = 0.054
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = -3
Query: 328 HSDH-SFPSLLHGY-HDRLYCSYREQNIHLHHWCNYHDQKRNCRYHNDCYHQNYSRDRY* 155
H DH + L G H+ C + HH ++HD +HN +N ++ +
Sbjct: 520 HEDHHNHDHALQGVNHNGACCEHHGDANKSHHHDHHHDSSNEESHHNSLT-ENSCKENHS 578
Query: 154 N*SHGHHQIHRHAH-LGYHH 98
+ HGH H H H HH
Sbjct: 579 H-CHGHDHHHHHHHDHSEHH 597
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 29.5 bits (63), Expect = 0.67
Identities = 21/61 (34%), Positives = 24/61 (39%)
Frame = -3
Query: 223 DQKRNCRYHNDCYHQNYSRDRY*N*SHGHHQIHRHAHLGYHHVRLRNLLHILLYDRYCGH 44
D R R H H + D H H H H H G HH R R+ H +D GH
Sbjct: 522 DDYRARRRHQKGRHHRHHHDHRHRHGHSHGDHHHHYH-GGHHQRRRH-HHPPAWD-VEGH 578
Query: 43 H 41
H
Sbjct: 579 H 579
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = -3
Query: 292 YHDRLYCSYREQNIHLHHWCNYHDQKRNCRYHNDCYH-QNYSRDRY*N*SHGHHQIHRHA 116
+HD + H HH+ H Q+R +H + + + DR H H+ R+
Sbjct: 539 HHDHRHRHGHSHGDHHHHYHGGHHQRRR-HHHPPAWDVEGHHHDRQ---QHS-HEAGRNH 593
Query: 115 HLGYHHV 95
H GY V
Sbjct: 594 HRGYGEV 600
>02_01_0500 -
3623837-3624019,3624591-3624778,3625209-3626147,
3626311-3626479,3626701-3626871,3626948-3627016,
3627094-3627201,3627844-3627997,3628659-3628738,
3628822-3628914,3628951-3629073,3629165-3629915,
3630123-3630163,3630338-3630385
Length = 1038
Score = 29.1 bits (62), Expect = 0.89
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Frame = -3
Query: 292 YHDRLYCSYREQNIHLHHWCNYHDQKRNCRYHN-DCYHQNYSRDRY*N*SHGHHQIHRHA 116
+HD Y + R+ H + CN Y D H NY+ D Y + S+ R+
Sbjct: 80 FHDDEYSTARDYRRHDTYHCNDGKHHEFESYGGVDILHDNYAADNYESGSYRDFCFDRNK 139
Query: 115 HLGYHHVRLRNLLHILLYDRYCGHH 41
+G R R H DRY H
Sbjct: 140 RIG---SRDRAEFHGDFEDRYRSSH 161
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 139 HHQIHRHAHLGYHHVRLRNLLH 74
HH H H H G+HH + + H
Sbjct: 36 HHHHHHHGHHGHHHEQQQQQQH 57
>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
Length = 430
Score = 27.5 bits (58), Expect = 2.7
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 145 HGHHQIHRHAH 113
HGHHQ+H H H
Sbjct: 25 HGHHQVHGHHH 35
>11_06_0247 -
21669299-21669348,21669673-21670012,21670110-21670199,
21670280-21670339,21670564-21670856,21671176-21671245,
21671623-21671970,21673188-21673318,21673418-21673901,
21674839-21675558
Length = 861
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -3
Query: 130 IHRHAHLGYHH-VRLRNLLHI 71
IH H HL HH RL LLH+
Sbjct: 12 IHLHLHLHLHHPPRLHRLLHL 32
>03_04_0174 - 18044516-18046327
Length = 603
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -3
Query: 253 IHLHHWCNYHDQKRNCRYHNDCYHQNYSRDRY*N*SHGHHQIHRHAHLGYHH 98
+ LHH ++H Q D H++Y R S H H H + YHH
Sbjct: 8 VSLHH--HHHHQHAASPSPPDQPHKSYPSSRGSTSSPSSHHTHNHTY--YHH 55
>01_06_1815 -
40064351-40064887,40064987-40065634,40065834-40065890,
40065921-40065941,40066714-40066941
Length = 496
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 313 FPSLL-HGYHDRLYCSYREQNIHLHHW 236
FPSLL H H + S+REQ + L +W
Sbjct: 422 FPSLLYHVLHGPISVSHREQVVWLPYW 448
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 232 NYHDQKRNCRYHNDCYHQNYSRDRY*N*SHGHHQIHRHAHLGYH 101
+YH + ++ +H +HQNY R + HHQ ++ H YH
Sbjct: 627 DYHWEDQSY-HHQQNHHQNYYGHRQMSQDQYHHQ--QNHHQNYH 667
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 148 SHGHHQIHRHAHLGYHH 98
SH HHQ H H +HH
Sbjct: 51 SHSHHQYHLPDHHHHHH 67
>01_06_0671 -
31076463-31076610,31077060-31077202,31077758-31077963,
31078119-31078644,31078753-31078854,31079572-31079637,
31079710-31079822,31080260-31080345,31081007-31081146
Length = 509
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -3
Query: 283 RLYCSYRE-QNIHLHH-WCNYHDQKRNCRYHNDCYHQN 176
R YCS E +++ L W Y KRN N H N
Sbjct: 244 RTYCSSNEDEDLMLEQSWQKYDSVKRNAELENPVKHSN 281
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 25.8 bits (54), Expect = 8.3
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -3
Query: 139 HHQIHRHAHLGYHHV 95
HH H+H H+ ++H+
Sbjct: 774 HHHYHQHEHMSHYHM 788
>10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841
Length = 348
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 211 FSSGHDSYTNGAGGY-SAHDSYS 276
+ SG YT G+GGY SA +YS
Sbjct: 229 YGSGGTGYTGGSGGYNSAPGNYS 251
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = -3
Query: 271 SYREQNIHLHHWCNYHDQKRNCRYHNDCYHQNYSRDRY*N*SHGHHQIHR 122
+Y + L N+H Q++ H+ Y Q + + H HHQ H+
Sbjct: 20 NYYNRGPPLQQQHNHHQQQQTSAPHHQQYVQRQPQQHH---HHNHHQQHQ 66
>02_01_0726 +
5440341-5440661,5441574-5441620,5442917-5442977,
5442978-5443035,5443303-5443463,5443692-5443808,
5443888-5443989,5444834-5444908,5444996-5445084,
5445171-5445220,5445562-5445641,5445744-5445953,
5446103-5446170,5446363-5446423,5446719-5447081
Length = 620
Score = 25.8 bits (54), Expect = 8.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 139 HHQIHRHAHLGYHH 98
HH H H H G+HH
Sbjct: 567 HHHHHGHHHHGHHH 580
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.132 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,501,758
Number of Sequences: 37544
Number of extensions: 102983
Number of successful extensions: 268
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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