Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_D09
         (166 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0409 + 3230761-3230856,3231463-3231560,3232747-3233386           25   6.2  
01_06_1151 + 34937738-34937855,34937959-34939244                       25   8.3  

>05_01_0409 + 3230761-3230856,3231463-3231560,3232747-3233386
          Length = 277

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 45  ESGYLLFNPNPLPSC 1
           +SG L  NP PLPSC
Sbjct: 116 QSGLLSANPYPLPSC 130


>01_06_1151 + 34937738-34937855,34937959-34939244
          Length = 467

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 5   EGSGFGLNNKYPLSFTSSYHREQ*PFGRNHIHNS 106
           +GS +G +N  P S  +SY R   P     +  S
Sbjct: 152 DGSSYGSDNDVPTSAAASYRRRASPLTSQELEAS 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,563,950
Number of Sequences: 37544
Number of extensions: 42492
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 14,793,348
effective HSP length: 35
effective length of database: 13,479,308
effective search space used: 256106852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)